{"id":30174086,"url":"https://github.com/microbiome/oma_manuscript","last_synced_at":"2026-01-20T18:08:23.126Z","repository":{"id":309337686,"uuid":"1035571385","full_name":"microbiome/OMA_manuscript","owner":"microbiome","description":null,"archived":false,"fork":false,"pushed_at":"2025-08-11T09:11:55.000Z","size":63411,"stargazers_count":0,"open_issues_count":3,"forks_count":3,"subscribers_count":1,"default_branch":"devel","last_synced_at":"2025-08-11T11:24:08.489Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"BibTeX Style","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/microbiome.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-08-10T17:19:27.000Z","updated_at":"2025-08-11T09:11:58.000Z","dependencies_parsed_at":"2025-08-11T11:34:53.730Z","dependency_job_id":null,"html_url":"https://github.com/microbiome/OMA_manuscript","commit_stats":null,"previous_names":["microbiome/oma_manuscript"],"tags_count":null,"template":false,"template_full_name":null,"purl":"pkg:github/microbiome/OMA_manuscript","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FOMA_manuscript","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FOMA_manuscript/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FOMA_manuscript/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FOMA_manuscript/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/microbiome","download_url":"https://codeload.github.com/microbiome/OMA_manuscript/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microbiome%2FOMA_manuscript/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":269977314,"owners_count":24506556,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-11T02:00:10.019Z","response_time":75,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-12T00:16:05.629Z","updated_at":"2026-01-20T18:08:23.104Z","avatar_url":"https://github.com/microbiome.png","language":"BibTeX Style","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Orchestrating Microbiome Analysis with Bioconductor \u0026mdash; article \u003cimg src=\"figures/mia_logo.png\" align=\"right\" width=\"120\" /\u003e\n\nThis repository includes all the source files to used to generate article on\n_Orchestrating Microbiome Analysis with Bioconductor_. This article is written\nonly using Quarto files, based on the\n[Nature Quarto template](https://github.com/christopherkenny/nature).\n\n## Project structure\n\n```\n.\n├── _extensions/ # Quarto extensions\n├── bibliography.bib # Bibliography / references\n├── data/ # Data files used in the article\n├── fig.eps # EPS figure used in the manuscript\n├── figures/ # Additional figures\n├── manuscript.qmd # Main Quarto source file\n├── manuscript.tex # Generated LaTeX source\n├── manuscript.pdf # Rendered PDF output\n├── README.md # Project documentation\n├── sn-apacite.bst # BibTeX style file (APA citation style)\n├── sn-aps.bst # BibTeX style file (APS style)\n├── sn-basic.bst # BibTeX style file (Basic Springer style)\n├── sn-chicago.bst # BibTeX style file (Chicago style)\n├── sn-jnl.cls # Springer LaTeX class file\n├── sn-mathphys-ay.bst # BibTeX style file (Math/Physics, author-year)\n├── sn-mathphys-num.bst # BibTeX style file (Math/Physics, numeric)\n├── sn-nature.bst # BibTeX style file (Nature style)\n└── sn-vancouver.bst # BibTeX style file (Vancouver style)\n```\n\n## Funding\n\n\u003cimg src=\"figures/findingpheno_logo.png\" align=\"right\" width=\"160\" /\u003e\n\nThis project received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 952914 ([FindingPheno](https://findingpheno.eu/)).\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Foma_manuscript","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmicrobiome%2Foma_manuscript","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmicrobiome%2Foma_manuscript/lists"}