{"id":19221036,"url":"https://github.com/midnighter/nextflow-utility-services","last_synced_at":"2025-05-13T01:14:53.773Z","repository":{"id":59705214,"uuid":"538649473","full_name":"Midnighter/nextflow-utility-services","owner":"Midnighter","description":"A collection of Groovy classes that provide utility services to nextflow pipelines.","archived":false,"fork":false,"pushed_at":"2022-10-25T05:56:39.000Z","size":34,"stargazers_count":13,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-05-13T01:14:43.181Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Groovy","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Midnighter.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-09-19T18:45:48.000Z","updated_at":"2024-04-09T16:50:31.000Z","dependencies_parsed_at":"2023-01-20T18:01:08.901Z","dependency_job_id":null,"html_url":"https://github.com/Midnighter/nextflow-utility-services","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Midnighter%2Fnextflow-utility-services","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Midnighter%2Fnextflow-utility-services/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Midnighter%2Fnextflow-utility-services/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Midnighter%2Fnextflow-utility-services/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Midnighter","download_url":"https://codeload.github.com/Midnighter/nextflow-utility-services/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253851074,"owners_count":21973674,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T14:39:45.222Z","updated_at":"2025-05-13T01:14:53.747Z","avatar_url":"https://github.com/Midnighter.png","language":"Groovy","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Nextflow Utility Services\n\nA collection of custom Groovy service classes intended for use in nextflow pipelines.\n\n| Service                                                                                                                                             | Demo                                        | Description                                                                                              |\n| --------------------------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------- | -------------------------------------------------------------------------------------------------------- |\n| [`lib/FormattingService.groovy`](lib/FormattingService.groovy)                                                                                      | `nextflow run formatting.nf -dump-channels` | Format objects as JSON for pretty printing.                                                              |\n| [`lib/FileTypeQueryService.groovy`](lib/FileTypeQueryService.groovy)                                                                                | `nextflow run file_type_query.nf`           | Query file path objects for compression and common sequencing data types. Can be extended indefinitely.  |\n| [`lib/CustomChannelOperators.groovy`](lib/CustomChannelOperators.groovy)                                                                            | `nextflow run join_on_keys.nf`              | Extract values via given keys from maps in two different channels and join those channels on the values. |\n| [`lib/HTTPRequestsService.groovy`](lib/HTTPRequestsService.groovy)\u003cbr/\u003e[`lib/HTTPResponse.groovy`](lib/HTTPResponse.groovy)                         | `nextflow run http_requests.nf`             | Perform HTTP requests via a simplified API. At the moment only POST is supported.                        |\n| [`lib/SlackMessagingService.groovy`](lib/SlackMessagingService.groovy)\u003cbr/\u003e[`assets/pipelineStatusMessage.json`](assets/pipelineStatusMessage.json) | `nextflow run slack_messaging.nf`           | Post a pipeline status message to Slack using an incoming webhook URL.                                   |\n\n## Usage\n\nIf you intend to use one or more of the classes from this repository. Simply copy them from the [`lib`](lib) directory to your pipeline's `lib` directory. Some classes additionally require assets which you should similarly copy from the [`assets`](assets) directory to your pipeline's `assets` directory.\n\nIf you want to use a service inside one of your modules, rather than in the main workflow, you may have to import it by its class name.\n\n```nextflow\nimport Service\n```\n\n## Copyright\n\n-   Copyright © 2022, Moritz E. Beber\n-   Free software, distributed under the [MIT license](LICENSE)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmidnighter%2Fnextflow-utility-services","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmidnighter%2Fnextflow-utility-services","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmidnighter%2Fnextflow-utility-services/lists"}