{"id":18365302,"url":"https://github.com/mit-lcp/bst209-2024","last_synced_at":"2025-08-06T15:10:58.844Z","repository":{"id":250759990,"uuid":"785337284","full_name":"MIT-LCP/bst209-2024","owner":"MIT-LCP","description":"Course materials for BST209","archived":false,"fork":false,"pushed_at":"2024-08-13T17:46:22.000Z","size":60250,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":8,"default_branch":"main","last_synced_at":"2025-06-16T05:07:49.930Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MIT-LCP.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-04-11T17:25:16.000Z","updated_at":"2025-03-18T17:15:46.000Z","dependencies_parsed_at":"2024-12-24T00:37:36.465Z","dependency_job_id":null,"html_url":"https://github.com/MIT-LCP/bst209-2024","commit_stats":null,"previous_names":["mit-lcp/bst209-2024"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/MIT-LCP/bst209-2024","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MIT-LCP%2Fbst209-2024","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MIT-LCP%2Fbst209-2024/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MIT-LCP%2Fbst209-2024/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MIT-LCP%2Fbst209-2024/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MIT-LCP","download_url":"https://codeload.github.com/MIT-LCP/bst209-2024/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MIT-LCP%2Fbst209-2024/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":269101502,"owners_count":24359963,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-06T02:00:09.910Z","response_time":99,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-05T23:13:08.593Z","updated_at":"2025-08-06T15:10:58.790Z","avatar_url":"https://github.com/MIT-LCP.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"## BST 209 Course Repository\n\n### Summer 2024\n\nWelcome to the BST 209 course repository! \n\nCanvas link: https://canvas.harvard.edu/courses/141013/assignments/syllabus\n\n# Instructors\n\n- Leo Celi: lceli@mit.edu\n- Heather Mattie: hemattie@hsph.harvard.edu \n- Chrystinne Fernandes: cof@mit.edu\n- Tom Pollard: tpollard@mit.edu\n\n# Teaching Assistants\n\n- Fredrik Willumsen Haug: fredrik_willumsenhaug@college.harvard.edu\n- Serena Tsai: ytsai@hms.harvard.edu\n\n# Downloading course materials using Git with RStudio\n\nYou can use Git within RStudio to download the course materials. If you\nhaven't cloned the repository before, follow these instructions:\n\n1. Click on the green \"Clone or Download\" on Github and copy the link.\n\n2. Open RStudio, and go to File \u003e New Project \u003e Version Control \u003e Git,\nand paste in the link you just copied. Under \"Create Project as\nSubdirectory of\", browse and select a folder where you want the course\nmaterials to go.\n\n3. Press \"Create Project\". This will create a folder called `bst209-2024`\nin the folder you selected in step 2.\n\n4. Now, you can open this project using the projects tab in the upper\nright of RStudio, or going to File \u003e Open Project and then navigating\nto the BST209-2024 folder and opening the `.Rproj` file.\n\nIf you already cloned the repository outside of RStudio (e.g. using\nGit Bash), you can associate the directory that was created in that\nstep with RStudio. \n\nIn RStudio, go to File \u003e New Project \u003e Existing Directory and click on \nthe bst209 folder.  Then click \"Create Project\". Then you can follow\nstep 4 above to open the project when you launch RStudio. \n\nYou can read more about RStudio projects here:\nhttps://support.rstudio.com/hc/en-us/articles/200526207-Using-Projects\n\n# Updating the course repo\n\nOnce you cloned the course repository and want to get updates, you must\nuse `git pull` to get updates.\n\nIn RStudio, if you followed the instructions above, simply navigate\nto the Git tab and press the Pull button. In terminal / Git bash, use\n`cd` to navigate to the `bst209-2024` folder, then run `git pull`.\n\n# Taking notes on course materials\n\nIf you would like to take notes and write in the course materials, you can\nsave a copy of the file you want to take notes on with the filename\ncontaining `personal`. \n\nFor example, if you want to take notes on the\nfile `00-motivation.Rmd`, save it as `00-motivation_personal.Rmd`. Then,\nyou can edit the `00-motivation_personal.Rmd` file. We have configured\nGit to ignore any files that contain `personal` in the filename, so \nany changes you make won't show up in Git. This will\nallow you to update the course repo without any issues.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmit-lcp%2Fbst209-2024","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmit-lcp%2Fbst209-2024","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmit-lcp%2Fbst209-2024/lists"}