{"id":19434518,"url":"https://github.com/mlin/minimap2-scatter","last_synced_at":"2026-03-02T15:44:21.718Z","repository":{"id":138431336,"uuid":"385547655","full_name":"mlin/minimap2-scatter","owner":"mlin","description":"WIP proof-of-concept","archived":false,"fork":false,"pushed_at":"2021-08-06T19:38:04.000Z","size":6,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-01-07T20:46:10.302Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"wdl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mlin.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-07-13T09:23:50.000Z","updated_at":"2021-08-06T19:38:07.000Z","dependencies_parsed_at":null,"dependency_job_id":"21169a0e-8a1b-4168-96e1-c018ce09a7e6","html_url":"https://github.com/mlin/minimap2-scatter","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlin%2Fminimap2-scatter","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlin%2Fminimap2-scatter/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlin%2Fminimap2-scatter/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlin%2Fminimap2-scatter/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mlin","download_url":"https://codeload.github.com/mlin/minimap2-scatter/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":240614728,"owners_count":19829398,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-10T14:46:40.114Z","updated_at":"2026-03-02T15:44:16.688Z","avatar_url":"https://github.com/mlin.png","language":"wdl","funding_links":[],"categories":[],"sub_categories":[],"readme":"# minimap2-scatter\n\n## WIP proof-of-concept\n\nSee also: https://github.com/mlin/minimap2/tree/distributed-mapping\n\nHow to:\n\n```bash\ngit clone --recursive https://github.com/mlin/minimap2-scatter.git\ncd minimap2-scatter\n\nmake  # builds Docker image locally\n\nexport MINIWDL__DOWNLOAD_CACHE__PUT=true\nexport MINIWDL__DOWNLOAD_CACHE__GET=true\nexport MINIWDL__DOWNLOAD_CACHE__DIR=/tmp/miniwdl_download_cache\nminiwdl run _demo.wdl \\\n    db_fasta=s3://idseq-public-references/test/viral-alignment-indexes/viral_nt \\\n    fastq=https://github.com/chanzuckerberg/idseq-workflows/raw/main/short-read-mngs/test/norg_13__nacc_35__uniform_weight_per_organism__hiseq_reads__v10__R1.fastq.gz \\\n    fastq2=https://github.com/chanzuckerberg/idseq-workflows/raw/main/short-read-mngs/test/norg_13__nacc_35__uniform_weight_per_organism__hiseq_reads__v10__R2.fastq.gz \\\n    shards=4 --verbose\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmlin%2Fminimap2-scatter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmlin%2Fminimap2-scatter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmlin%2Fminimap2-scatter/lists"}