{"id":29950726,"url":"https://github.com/mlund/template-for-supporting-information","last_synced_at":"2026-02-07T09:32:09.765Z","repository":{"id":151377271,"uuid":"363148334","full_name":"mlund/template-for-supporting-information","owner":"mlund","description":"Template for Notebooks for Supporting Information and Zenodo Deposition","archived":false,"fork":false,"pushed_at":"2024-01-05T10:54:06.000Z","size":38,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-09-05T05:18:04.151Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc-by-4.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mlund.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2021-04-30T13:24:19.000Z","updated_at":"2023-12-24T08:30:13.000Z","dependencies_parsed_at":"2025-04-14T12:59:43.201Z","dependency_job_id":null,"html_url":"https://github.com/mlund/template-for-supporting-information","commit_stats":null,"previous_names":[],"tags_count":0,"template":true,"template_full_name":null,"purl":"pkg:github/mlund/template-for-supporting-information","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlund%2Ftemplate-for-supporting-information","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlund%2Ftemplate-for-supporting-information/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlund%2Ftemplate-for-supporting-information/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlund%2Ftemplate-for-supporting-information/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mlund","download_url":"https://codeload.github.com/mlund/template-for-supporting-information/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mlund%2Ftemplate-for-supporting-information/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29191403,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-07T07:37:03.739Z","status":"ssl_error","status_checked_at":"2026-02-07T07:37:03.029Z","response_time":63,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-03T11:18:59.477Z","updated_at":"2026-02-07T09:32:09.761Z","avatar_url":"https://github.com/mlund.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/mlund/template-for-supporting-information/HEAD)\n[![CC BY 4.0][cc-by-shield]][cc-by]\n\n[cc-by]: http://creativecommons.org/licenses/by/4.0/\n[cc-by-shield]: https://img.shields.io/badge/License-CC%20BY%204.0-lightgrey.svg\n\n# Electronic Notebook: Title goes here\n\nTemplate for Notebooks for Supporting Information and Zenodo Deposition.\n\n## Instruction video\n[![Watch the video](https://img.youtube.com/vi/UhexcR2hQP4/hqdefault.jpg)](https://www.youtube.com/embed/UhexcR2hQP4)\n\n\n## Layout\n\nDescription of the directory layout.\n\n- `README.md` This is the file you're viewing right now.\n- `environment.yml` Defines the required Python packages using conda. Try to pin to specific major versions of your\n  dependencies as their behavior may change in the future.\n  The environment is currently called `my_environment` and you'll likely want to rename it to something less generic.\n- `.zenodo.json` metadata for Zenodo.\n- `pyproject.toml` and `github/workflows/ruff.yml` sets up ruff linting for Python and Jupyter Notebooks. Delete if not relevant to your project.\n\n## Requirements\n\nTo run the Notebooks online, click on the _Launch Binder_ badge above. Alternatively, to run on your own computer,\ninstall Python using _e.g._ [Miniforge](https://github.com/conda-forge/miniforge) or [Anaconda](https://docs.conda.io)\nand make sure all required packages are loaded by issuing the following terminal commands\n\n``` bash\nconda env create -f environment.yml\nsource activate my_environment\njupyter-lab\n```\n\n## Checklist - delete before publishing\n\n- [ ] Add authors incl. ORCID's and other relevant metadata to `.zenodo.json`; to learn more about the available datafields, see\n  [here](https://developers.zenodo.org/?python#depositions).\n  Before publishing, validate the JSON file using the Zenodo deposition schema [`legacyrecord.json`](https://github.com/zenodo/zenodo/blob/482ee72ad501cbbd7f8ce8df9b393c130d1970f7/zenodo/modules/deposit/jsonschemas/deposits/records/legacyrecord.json#L4) with _e.g._\n  ``` bash\n  pip install check-jsonschema\n  check-jsonschema --schemafile https://raw.githubusercontent.com/zenodo/zenodo/master/zenodo/modules/deposit/jsonschemas/deposits/records/legacyrecord.json .zenodo.json\n  ```\n- [ ] Update Binder badge to point to your repository\n- [ ] Add the Github repo link and DOI of the associated publication to `.zenodo.json` under `related_identifiers`.\n- [ ] Update `environment.yml` to include required packages. Select name for environment.\n- [ ] If needed, change the license (`LICENSE` and badge in `README.md`), see _e.g._ [Creative Commons alternatives](https://github.com/santisoler/cc-licenses)\n- [ ] Activate Github tracking of the repository on https://zenodo.org. Repository must be public.\n- [ ] Create a release on Github - adhere to [SemVer](https://semver.org). This triggers a deposition on Zenodo.\n- [ ] Once you get the Zenodo DOI, add a badge to the top if this README. Use link to _all_ versions.\n- [ ] Feel free to update and make new releases!\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmlund%2Ftemplate-for-supporting-information","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmlund%2Ftemplate-for-supporting-information","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmlund%2Ftemplate-for-supporting-information/lists"}