{"id":17278177,"url":"https://github.com/mojaveazure/loomr","last_synced_at":"2026-04-08T14:01:33.701Z","repository":{"id":96492921,"uuid":"107727871","full_name":"mojaveazure/loomR","owner":"mojaveazure","description":"An R-based interface for loom files","archived":false,"fork":false,"pushed_at":"2020-07-09T17:51:09.000Z","size":335,"stargazers_count":66,"open_issues_count":51,"forks_count":16,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-03-27T22:04:55.945Z","etag":null,"topics":["hdf5","loom","loom-files","r","single-cell-genomics","single-cell-rna-seq"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mojaveazure.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-10-20T21:24:06.000Z","updated_at":"2025-01-14T19:45:03.000Z","dependencies_parsed_at":"2023-03-05T04:45:22.336Z","dependency_job_id":null,"html_url":"https://github.com/mojaveazure/loomR","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mojaveazure%2FloomR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mojaveazure%2FloomR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mojaveazure%2FloomR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mojaveazure%2FloomR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mojaveazure","download_url":"https://codeload.github.com/mojaveazure/loomR/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248845703,"owners_count":21170837,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["hdf5","loom","loom-files","r","single-cell-genomics","single-cell-rna-seq"],"created_at":"2024-10-15T09:11:00.907Z","updated_at":"2026-04-08T14:01:28.657Z","avatar_url":"https://github.com/mojaveazure.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003c!--\n[![CRAN Version](https://www.r-pkg.org/badges/version/loomR)](https://cran.r-project.org/package=loomR)\n[![CRAN Downloads](https://cranlogs.r-pkg.org/badges/loomR)](https://cran.r-project.org/package=loomR)\n--\u003e\n\n# loomR\n\n### An R interface for loom files\n\nFor more information on loom files, please see the documentation for [loompy](https://github.com/linnarsson-lab/loompy)\n\n## Tutorial\n\nA tutorial for loomR can be found [here](http://satijalab.org/loomR/loomR_tutorial.html). A full function and method reference can be found [here](http://satijalab.org/loomR/loomR.pdf).\n\n## Compatability with loompy\n\nloomR aims to be completely compatible with loompy. Currently, loomR implements the following methods of the loompy API:\n - map/apply\n - create\n - connect\n - combine\n - subset\n - add layer\n - add attriute\n - add graph\n - add cells\n - add loom\n\n## Dependencies\n\nloomR depends on:\n - [R](https://cran.r-project.org/) v3.4.x\n - The [R6](https://cran.r-project.org/package=R6) package\n - The [hdf5r](https://cran.r-project.org/package=hdf5r) package\n - The [iterators](https://cran.r-project.org/package=iterators) package\n - The [itertools](https://cran.r-project.org/package=itertools) package\n - The HDF5 [C++ API](https://support.hdfgroup.org/HDF5/release/obtainsrc.html)\n\nTo get the HDF5 C++ API, please see the table below:\n\n| Operating system | Command |\n| ---------------- | ------- |\n| macOS | Using [Homebrew](https://brew.sh/), `brew install hdf5` |\n| Debian and Debian-based OSes | `sudo apt install libhdf5-dev` |\n| Red Hat-based OSes | `sudo dnf install hdf5-devel` or `sudo yum install hdf5-devel` |\n| Windows | Download precombiled binaries from Mario Annau [here](https://github.com/mannau/h5-libwin) |\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmojaveazure%2Floomr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmojaveazure%2Floomr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmojaveazure%2Floomr/lists"}