{"id":34066653,"url":"https://github.com/moltools/versalign","last_synced_at":"2026-04-05T11:32:07.775Z","repository":{"id":170446219,"uuid":"448948184","full_name":"moltools/versalign","owner":"moltools","description":"Naive alignment for lists of arbitrary objects.","archived":false,"fork":false,"pushed_at":"2026-01-18T18:00:05.000Z","size":1029,"stargazers_count":4,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2026-01-19T01:36:53.034Z","etag":null,"topics":["alignment","arbitrary-objects","msa","pairwise"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/moltools.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-01-17T15:28:20.000Z","updated_at":"2026-01-18T18:00:08.000Z","dependencies_parsed_at":"2024-05-18T22:30:05.704Z","dependency_job_id":"f920e3a3-618f-4ea2-a01e-61abf70439c7","html_url":"https://github.com/moltools/versalign","commit_stats":null,"previous_names":["davidmeijer/monomer-aligner","davidmeijer/versalign","moltools/versalign"],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/moltools/versalign","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moltools%2Fversalign","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moltools%2Fversalign/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moltools%2Fversalign/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moltools%2Fversalign/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/moltools","download_url":"https://codeload.github.com/moltools/versalign/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moltools%2Fversalign/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31434624,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-05T08:13:15.228Z","status":"ssl_error","status_checked_at":"2026-04-05T08:13:11.839Z","response_time":75,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alignment","arbitrary-objects","msa","pairwise"],"created_at":"2025-12-14T06:44:50.823Z","updated_at":"2026-04-05T11:32:07.755Z","avatar_url":"https://github.com/moltools.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cp align=\"center\"\u003e\n    \u003cimg\n      src=\"https://raw.githubusercontent.com/moltools/versalign/main/logo.png\"\n      height=\"150\"\n      alt=\"versalign logo\"\n    /\u003e  \n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/moltools/versalign/actions/workflows/tests.yml\"\u003e\n      \u003cimg alt=\"testing \u0026 quality\" src=\"https://github.com/moltools/versalign/actions/workflows/tests.yml/badge.svg\" /\u003e\u003c/a\u003e\n    \u003ca href=\"https://pypi.org/project/versalign\"\u003e\n      \u003cimg alt=\"PyPI\" src=\"https://img.shields.io/pypi/v/versalign\" /\u003e\u003c/a\u003e\n    \u003ca href=\"https://pypi.org/project/versalign\"\u003e\n      \u003cimg alt=\"PyPI - Python Version\" src=\"https://img.shields.io/pypi/pyversions/versalign\" /\u003e\u003c/a\u003e\n    \u003ca href=\"https://doi.org/10.5281/zenodo.17410570\"\u003e\n      \u003cimg src=\"https://zenodo.org/badge/DOI/10.5281/zenodo.17410570.svg\" alt=\"DOI\" /\u003e\u003c/a\u003e\n\u003c/p\u003e\n\nVersalign is a naive alignment tool for lists of arbitrary objects. Versalign is able to perform pairwise sequence alignments and star-based multiple sequence alignments, based on custom scoring functions. Versalign is primarily designed to align short-ish sequences.\n\nVersalign is a Python library and has no command line interface.\n\nPairwise alignments, which is the core of this library, is built around Biopython's `PairwiseAligner` class.\n\n## Installation\n\nThe most recent code and data can be installed directly from GitHub with:\n\n```shell\npip install git+https://github.com/moltools/versalign.git\n```\n\nThe latest stable release can be installed from PyPI with:\n\n```shell\npip install versalign\n```\n\nVersalign has been developed for Linux and MacOS.\n\n## Getting started\n\nSee the [examples](https://github.com/moltools/versalign/tree/main/examples) folder for some basic usage examples.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoltools%2Fversalign","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmoltools%2Fversalign","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoltools%2Fversalign/lists"}