{"id":25359687,"url":"https://github.com/monarch-initiative/loinc2hpo","last_synced_at":"2025-07-21T17:33:38.339Z","repository":{"id":28683363,"uuid":"113428293","full_name":"monarch-initiative/loinc2hpo","owner":"monarch-initiative","description":"Java library to map LOINC-encoded test results to Human Phenotype Ontology","archived":false,"fork":false,"pushed_at":"2024-01-16T20:48:59.000Z","size":11838,"stargazers_count":31,"open_issues_count":4,"forks_count":8,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-04-05T15:11:14.455Z","etag":null,"topics":["ehr","fhir","healthcare","hpo","loinc","monarchinitiative"],"latest_commit_sha":null,"homepage":"http://loinc2hpo.readthedocs.io/en/latest/","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/monarch-initiative.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-12-07T09:14:11.000Z","updated_at":"2025-03-07T16:03:30.000Z","dependencies_parsed_at":"2022-08-02T12:12:31.750Z","dependency_job_id":null,"html_url":"https://github.com/monarch-initiative/loinc2hpo","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/monarch-initiative/loinc2hpo","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Floinc2hpo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Floinc2hpo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Floinc2hpo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Floinc2hpo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/monarch-initiative","download_url":"https://codeload.github.com/monarch-initiative/loinc2hpo/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/monarch-initiative%2Floinc2hpo/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":266342809,"owners_count":23914262,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-21T11:47:31.412Z","response_time":64,"last_error":null,"robots_txt_status":null,"robots_txt_updated_at":null,"robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["ehr","fhir","healthcare","hpo","loinc","monarchinitiative"],"created_at":"2025-02-14T21:07:27.024Z","updated_at":"2025-07-21T17:33:38.311Z","avatar_url":"https://github.com/monarch-initiative.png","language":"Java","funding_links":[],"categories":["医学"],"sub_categories":["语音合成"],"readme":"[![Codacy Badge](https://api.codacy.com/project/badge/Grade/709c959bb0024403a667affaf2b9f476)](https://www.codacy.com/app/peter.robinson/loinc2hpo?utm_source=github.com\u0026amp;utm_medium=referral\u0026amp;utm_content=monarch-initiative/loinc2hpo\u0026amp;utm_campaign=Badge_Grade)\n[![Documentation Status](https://readthedocs.org/projects/loinc2hpo/badge/?version=latest)](https://loinc2hpo.readthedocs.io/en/latest/?badge=latest)\n\n\n# loinc2hpo\nA Java library to map tests results from [LOINC](https://loinc.org/) codes to  \n[Human Phenotype Ontology.](https://hpo.jax.org/app/) terms.\nFor details, please see [Zhang et al. (2012)](https://pubmed.ncbi.nlm.nih.gov/31119199/) Semantic integration of clinical laboratory tests from electronic \nhealth records for deep phenotyping and biomarker discovery. *NPJ Digit Med*. 2019;2:32.\n\n\n## LOINC2HPO annotation\nThe LOINC to HPO mapping file is available at the\n[loinc2hpoAnnotation](https://github.com/TheJacksonLaboratory/loinc2hpoAnnotation) repository.\n\n## Using loinc2hpo\nloinc2hpo is intended to be used as a software library. Selected functions are demonstrated in the CLI app.\n\n## documentation\nPlease refer to http://loinc2hpo.readthedocs.io/en/latest/.\n\n## spring framework app\nWe are developing a separate app that will specialize in one functionality of this app - converting FHIR observations into HPO terms. The new app will be coded with the Spring framework and we strive to achieve enterprise-level quality. Please refer to the app with the following link: https://github.com/OCTRI/fhir2hpo\n\n## funding\nWe gratefully acknowledge funding by NCATS (CD2H project, A NATIONAL CENTER FOR DIGITAL HEALTH INFORMATICS INNOVATION), 1U24TR002306\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmonarch-initiative%2Floinc2hpo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmonarch-initiative%2Floinc2hpo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmonarch-initiative%2Floinc2hpo/lists"}