{"id":22901413,"url":"https://github.com/mooerslab/aca2022","last_synced_at":"2026-05-07T10:32:03.747Z","repository":{"id":50885867,"uuid":"520108578","full_name":"MooersLab/ACA2022","owner":"MooersLab","description":"Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association","archived":false,"fork":false,"pushed_at":"2024-05-25T01:01:50.000Z","size":4121,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-09-10T01:30:56.194Z","etag":null,"topics":["aca","cloud-computing","colab-notebook","emacs","ghosttext","literate-programming","molecular-graphics","pdb-database","protein-structure","pymol","python","sublime-text","vim","vsc"],"latest_commit_sha":null,"homepage":"","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MooersLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-08-01T12:49:54.000Z","updated_at":"2024-05-25T01:01:53.000Z","dependencies_parsed_at":"2025-02-07T03:42:00.207Z","dependency_job_id":"03f2667d-e076-4f49-9e51-43fb698f630a","html_url":"https://github.com/MooersLab/ACA2022","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/MooersLab/ACA2022","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MooersLab%2FACA2022","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MooersLab%2FACA2022/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MooersLab%2FACA2022/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MooersLab%2FACA2022/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MooersLab","download_url":"https://codeload.github.com/MooersLab/ACA2022/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MooersLab%2FACA2022/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32733437,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-07T02:14:30.463Z","status":"ssl_error","status_checked_at":"2026-05-07T02:14:29.405Z","response_time":62,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aca","cloud-computing","colab-notebook","emacs","ghosttext","literate-programming","molecular-graphics","pdb-database","protein-structure","pymol","python","sublime-text","vim","vsc"],"created_at":"2024-12-14T01:33:18.552Z","updated_at":"2026-05-07T10:32:03.731Z","avatar_url":"https://github.com/MooersLab.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"![Version](https://img.shields.io/static/v1?label=ACA2022\u0026message=0.2\u0026color=brightcolor)\n[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](https://opensource.org/licenses/MIT)\n\n\n# Easing script writing in Google Colab with structural biology snippets\n\n\nSlides from talk on 1 August 2022 at the 72nd Annual Meeting of the American Crystallographic Association: the Structural Sciences Society. \nThe talk was using using snippet libraries in Colab notebooks. \nThe end of the talk included using Neovim and other editors to code cells via GhostText; this might be the most widely useful takeaway from this talk.\n\nThe abstract has been published. A peer-reviewed paper is in preparation.\n\n```bibtex\n{\n  author  = {Mooers, Blaine},\n  journal = {Foundations of Crystallography},\n  title   = {Easing script writing on Google Colab with structural biology snippets},\n  year    = {2022},\n  volume = (A78},\n  pages = {a175},\n}\n```\n\n## Related repositories\n\n- [easypymol](https://github.com/MooersLab/EasyPyMOL/edit/master/README.md)\n- [pymolshortcuts](https://github.com/MooersLab/pymolshortcuts)\n- [orgpymolpysnips](https://github.com/MooersLab/orgpymolpysnips)\n- [rstudiopymolpysnips](https://github.com/MooersLab/rstudiopymolpysnips)\n- [taggedpymolpysnips](https://github.com/MooersLab/taggedpymolpysnips)\n- [jupyterlabpymolpysnips](https://github.com/MooersLab/jupyterlabpymolpysnips)\n- [colabOpenSourcePyMOLpySnips](https://github.com/MooersLab/colabOpenSourcePyMOLpySnips)\n- [colabPyMOLpySnips](https://github.com/MooersLab/colabPyMOLpySnips)\n- [PyMOLwallhangings](https://github.com/MooersLab/PyMOLwallhangings)\n\n## Update history\n\n|Version      | Changes                                                                                                                                                                         | Date                 |\n|:-----------:|:------------------------------------------------------------------------------------------------------------------------------------------:|:--------------------:|\n| Version 0.2 |   Added badges, funding, and update table.                                                                                                                  | 2024 May 24         |\n\n\n## Sources of funding\n\n- NIH: R01 CA242845\n- NIH: R01 AI088011\n- NIH: P30 CA225520 (PI: R. Mannel)\n- NIH: P20 GM103640 and P30 GM145423 (PI: A. West)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmooerslab%2Faca2022","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmooerslab%2Faca2022","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmooerslab%2Faca2022/lists"}