{"id":23191924,"url":"https://github.com/moold/hifiasm2txt","last_synced_at":"2025-08-18T19:32:35.769Z","repository":{"id":247887091,"uuid":"826342449","full_name":"moold/hifiasm2txt","owner":"moold","description":"A small tool to convert hifiasm bin files to text format.","archived":false,"fork":false,"pushed_at":"2024-07-11T07:55:41.000Z","size":23,"stargazers_count":5,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-04-06T10:41:31.007Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/moold.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-09T14:20:28.000Z","updated_at":"2024-07-11T07:55:44.000Z","dependencies_parsed_at":"2024-07-11T05:54:20.316Z","dependency_job_id":null,"html_url":"https://github.com/moold/hifiasm2txt","commit_stats":null,"previous_names":["moold/hifiasm2txt"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/moold/hifiasm2txt","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fhifiasm2txt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fhifiasm2txt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fhifiasm2txt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fhifiasm2txt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/moold","download_url":"https://codeload.github.com/moold/hifiasm2txt/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fhifiasm2txt/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271049275,"owners_count":24691010,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-18T02:00:08.743Z","response_time":89,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-18T12:19:26.774Z","updated_at":"2025-08-18T19:32:35.452Z","avatar_url":"https://github.com/moold.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# hifiasm2txt\nA small tool to convert hifiasm bin files (`ec.bin`, `ovlp.source.bin` and `ovlp.reverse.bin`) to text format.\n- `ec.bin`: error corrected reads.\n- `ovlp.source.bin`: overlaps between reads from the same haplotype (?).\n- `ovlp.reverse.bin`: overlaps between reads from the different haplotype (?).\n\n## Installation\n\n#### Dependencies\n\n`hifiasm2txt` is written in rust, try below commands (no root required) or see [here](https://www.rust-lang.org/tools/install) to install `Rust` first.\n```\ncurl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh\n```\n\n#### Download and install\n\n```\ngit clone git@github.com:moold/hifiasm2txt.git\ncd hifiasm2txt \u0026\u0026 cargo build --release\n```\n*If you want to speed up downloading and compiling in China, please visit [here](https://mirrors.tuna.tsinghua.edu.cn/help/crates.io-index/) to set up a mirror (Tsinghua Open Source Mirror).*\n\n## Usage\n```\n./target/release/hifiasm2txt path_to_hifiasm_workdir/hifiasm.asm --out_ec_bin --out_so_bin --out_re_bin\n```\n\n## Parameters\n```\nA small tool to convert hifiasm bin files to text (gzip) format.\n\nUsage: hifiasm2txt [OPTIONS] \u003cPATH/PREFIX\u003e [PREFIX]\n\nArguments:\n  \u003cPATH/PREFIX\u003e  output file path and prefix of `hifiasm`.\n  [PREFIX]       prefix of output files. [default: hifiasm2txt]\n\nOptions:\n  -e, --out_ec_bin  convert PATH/PREFIX.ec.bin file.\n  -r, --out_re_bin  convert PATH/PREFIX.reverse.bin file.\n  -s, --out_so_bin  convert PATH/PREFIX.source.bin file.\n  -h, --help        Print help\n  -V, --version     Print version\n```","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoold%2Fhifiasm2txt","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmoold%2Fhifiasm2txt","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoold%2Fhifiasm2txt/lists"}