{"id":23191926,"url":"https://github.com/moold/map2ava","last_synced_at":"2025-10-17T02:35:24.655Z","repository":{"id":103035717,"uuid":"462179736","full_name":"moold/map2ava","owner":"moold","description":"Convert read-to-ref mapping to read-vs-read overlapping ","archived":false,"fork":false,"pushed_at":"2022-08-10T08:14:37.000Z","size":30,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-02-10T14:42:43.784Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/moold.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-02-22T07:10:12.000Z","updated_at":"2022-08-10T08:16:22.000Z","dependencies_parsed_at":"2023-03-13T04:16:50.377Z","dependency_job_id":null,"html_url":"https://github.com/moold/map2ava","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fmap2ava","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fmap2ava/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fmap2ava/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moold%2Fmap2ava/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/moold","download_url":"https://codeload.github.com/moold/map2ava/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247299786,"owners_count":20916186,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-18T12:19:26.879Z","updated_at":"2025-10-17T02:35:19.628Z","avatar_url":"https://github.com/moold.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# map2ava\nConvert read-to-ref mapping to read-vs-read overlapping. If the mapping regions of two reads overlap, then the overlapping region/positions of these two reads can be calculated by their mapping CIGARs.\n\n## Installation\n\n#### Dependencies\n\n`map2ava` is written in rust, try below commands (no root required) or see [here](https://www.rust-lang.org/tools/install) to install `Rust` first.\n```\ncurl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh\n```\n\n#### Download and install\n\n```\ngit clone https://github.com/moold/map2ava.git\ncd map2ava \u0026\u0026 cargo build --release\n```\n\n## Usage\n`./target/release/map2ava --thread 20 input.map.bam \u003e input.overlap.paf`\n\n## Parameters\nUse `./target/release/map2ava -h` to see options.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoold%2Fmap2ava","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmoold%2Fmap2ava","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoold%2Fmap2ava/lists"}