{"id":19234365,"url":"https://github.com/moshi4/pygenomeviz-data","last_synced_at":"2026-02-28T02:08:17.246Z","repository":{"id":50350397,"uuid":"500428633","full_name":"moshi4/pygenomeviz-data","owner":"moshi4","description":"pyGenomeViz data repository","archived":false,"fork":false,"pushed_at":"2022-10-26T15:37:21.000Z","size":19630,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-23T11:44:32.317Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/moshi4.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-06-06T12:41:17.000Z","updated_at":"2022-06-06T13:07:25.000Z","dependencies_parsed_at":"2023-01-20T10:46:05.614Z","dependency_job_id":null,"html_url":"https://github.com/moshi4/pygenomeviz-data","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/moshi4/pygenomeviz-data","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moshi4%2Fpygenomeviz-data","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moshi4%2Fpygenomeviz-data/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moshi4%2Fpygenomeviz-data/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moshi4%2Fpygenomeviz-data/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/moshi4","download_url":"https://codeload.github.com/moshi4/pygenomeviz-data/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/moshi4%2Fpygenomeviz-data/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29922879,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-27T19:37:42.220Z","status":"online","status_checked_at":"2026-02-28T02:00:07.010Z","response_time":90,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-09T16:13:36.498Z","updated_at":"2026-02-28T02:08:17.219Z","avatar_url":"https://github.com/moshi4.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# pygenomeviz-data\n\nDataset repository for [pyGenomeViz](https://github.com/moshi4/pyGenomeViz) examples.\n\n## Resources\n\n### Genbank Dataset\n\n- ***Escherichia phage*** (`escherichia_phage`)  \n  Four *Escherichia phage* genome dataset (max_genome_size=72,179 bp).  \n  It contains protein sequence similarity comparison links generated by MUMmer.\n  - JX128258\n  - MH051335\n  - MK373776\n  - MH816966\n\n- ***Erwinia phage*** (`erwinia_phage`)  \n  Four *Erwinia phage* genome dataset (max_genome_size=358,115 bp).  \n  It contains protein sequence similarity comparison links generated by MUMmer.\n  - MT939746\n  - MT939487\n  - MT939488\n  - LT96552\n\n- ***Enterobacteria phage*** (`enterobacteria_phage`)  \n  Six *Enterobacteria phage* genome dataset (max_genome_size=45,206 bp).  \n  It contains CDS similarity comparison links generated by MMseqs.\n  - NC_019724\n  - NC_024783\n  - NC_016566\n  - NC_013600\n  - NC_031081\n  - NC_028901\n  \n- ***Escherichia coli*** (`escherichia_coil`)  \n  Four *E.coli* genome dataset (max_genome_size=5,498,450 bp).  \n  It contains nucleotide sequence similarity comparison links generated by MUMmer.\n  - NC_000913\n  - NC_002695\n  - NC_011751\n  - NC_011750\n\n- ***Mycoplasma gallisepticum*** (`mycoplasma_gallisepticum`)  \n  Six `M.gallisepticum` genome dataset (max_genome_size=1,012,800 bp).  \n  It contains CDS similarity comparison links generated by MMseqs.  \n  - NC_004829\n  - NC_018407\n  - NC_018408\n  - NC_018409\n  - NC_017502\n  - NC_017503\n\n### GFF Files\n\n- **enterobacteria_phage.gff** (genome_size=60,942 bp)  \n  RefSeq assembly accession: [GCF_000844925.1](https://www.ncbi.nlm.nih.gov/assembly/GCF_000844925.1/)  \n\n- **escherichia_coli.gff.gz** (genome_size=4,641,652 bp)  \n  RefSeq assembly accession: [GCF_000005845.2](https://www.ncbi.nlm.nih.gov/assembly/GCF_000005845.2)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoshi4%2Fpygenomeviz-data","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmoshi4%2Fpygenomeviz-data","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmoshi4%2Fpygenomeviz-data/lists"}