{"id":16206910,"url":"https://github.com/mr-c/hive-cwl-examples","last_synced_at":"2026-01-19T23:05:51.067Z","repository":{"id":71656503,"uuid":"76861873","full_name":"mr-c/hive-cwl-examples","owner":"mr-c","description":null,"archived":false,"fork":false,"pushed_at":"2020-07-02T10:29:07.000Z","size":16,"stargazers_count":2,"open_issues_count":0,"forks_count":3,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-07-19T16:47:40.303Z","etag":null,"topics":["biocompute-objects","commonwl"],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mr-c.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-12-19T12:50:29.000Z","updated_at":"2023-09-18T21:28:24.000Z","dependencies_parsed_at":"2023-05-13T09:30:45.699Z","dependency_job_id":null,"html_url":"https://github.com/mr-c/hive-cwl-examples","commit_stats":{"total_commits":14,"total_committers":3,"mean_commits":4.666666666666667,"dds":0.5714285714285714,"last_synced_commit":"c9ffea0b60fa3bcf8e138af7c99ca141a6b8fb21"},"previous_names":["common-workflow-language/hive-cwl-examples"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/mr-c/hive-cwl-examples","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mr-c%2Fhive-cwl-examples","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mr-c%2Fhive-cwl-examples/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mr-c%2Fhive-cwl-examples/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mr-c%2Fhive-cwl-examples/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mr-c","download_url":"https://codeload.github.com/mr-c/hive-cwl-examples/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mr-c%2Fhive-cwl-examples/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28588971,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-19T20:45:59.482Z","status":"ssl_error","status_checked_at":"2026-01-19T20:45:41.500Z","response_time":67,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biocompute-objects","commonwl"],"created_at":"2024-10-10T10:08:24.975Z","updated_at":"2026-01-19T23:05:51.050Z","avatar_url":"https://github.com/mr-c.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"Manual translation of\nhttps://hive.biochemistry.gwu.edu/cgi-bin/prd/htscsrs//servlet.cgi?pageid=bcoexample_1\ninto CWL\n\nNotes:\n Not tested due to lack of source code\n\nThings not translated, but could be added without breaking CWL compatibility\n - usability_domain, could go in documentation or as a HIVE/biocompute specific\n   extension \n - xref\n - keywords\n - publication_status\n - modification_date, creation_date\n - \"verification\"\n - that this is a subtype of the \"antiviral_resistance_detection[ICD:B17]\",\n   could have been done via a Workflow that contains the other Workflow and\nsets different defaults.\n \n\nQuestions about biocompute: what's the relationship between \"pipeline\" and the\n\"type\" field in the biocompute object?\n\nHow does BioCompute model the flow of data between steps? (Or is that implicit\nin the \"script\": \"obj.123123\"?)\n\nWhat is the priority for defaults amongst the antiviral_resistance_detection typedef,\nthe biocompute object itself, and the referenced pipeline?\n\nWhat is the meaning of the verfication_kit?\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmr-c%2Fhive-cwl-examples","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmr-c%2Fhive-cwl-examples","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmr-c%2Fhive-cwl-examples/lists"}