{"id":18399816,"url":"https://github.com/mrc-ide/specio","last_synced_at":"2025-10-11T15:04:38.068Z","repository":{"id":52960518,"uuid":"164118723","full_name":"mrc-ide/specio","owner":"mrc-ide","description":":rainbow: Spectrum IO for EPP model for HIV epidemic estimates","archived":false,"fork":false,"pushed_at":"2021-04-12T16:43:50.000Z","size":18487,"stargazers_count":1,"open_issues_count":3,"forks_count":0,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-04-12T17:12:25.999Z","etag":null,"topics":["epp","spectrum"],"latest_commit_sha":null,"homepage":"https://mrc-ide.github.io/specio/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mrc-ide.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-01-04T14:41:29.000Z","updated_at":"2021-04-12T16:43:53.000Z","dependencies_parsed_at":"2022-08-24T07:51:00.547Z","dependency_job_id":null,"html_url":"https://github.com/mrc-ide/specio","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/mrc-ide/specio","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mrc-ide%2Fspecio","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mrc-ide%2Fspecio/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mrc-ide%2Fspecio/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mrc-ide%2Fspecio/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mrc-ide","download_url":"https://codeload.github.com/mrc-ide/specio/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mrc-ide%2Fspecio/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274732474,"owners_count":25339345,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-11T02:00:13.660Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["epp","spectrum"],"created_at":"2024-11-06T02:28:36.980Z","updated_at":"2025-10-11T15:04:33.035Z","avatar_url":"https://github.com/mrc-ide.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# specio \u003cimg src='images/logo.svg' align=\"right\" height=\"138.5\" /\u003e\n\n\u003c!-- badges: start --\u003e\n\n[![Project Status: WIP - Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](http://www.repostatus.org/badges/latest/wip.svg)](http://www.repostatus.org/#wip)\n[![Travis-CI Build Status](https://travis-ci.org/mrc-ide/specio.svg?branch=master)](https://travis-ci.org/mrc-ide/specio)\n[![codecov.io](https://codecov.io/github/mrc-ide/specio/coverage.svg?branch=master)](https://codecov.io/github/mrc-ide/specio?branch=master)\n\n\u003c!-- badges: end --\u003e\n\n`specio` handles reading and parsing data from Spectrum PJNZ file into an R consumable format for use in the [Estimation and Projection Package (EPP)](https://github.com/mrc-ide/eppasm) for estimating and projecting HIV prevalence.\n\n## Usage\n\nAs well as the functions required for EPP `specio` also provides 2 more general functions for extracting population data and PLHIV data from the PJNZ file. These are `extract_population` and `extract_hiv_population`. See [website reference](https://mrc-ide.github.io/specio/reference/index.html) for usage and examples.\n\n## Installation\n\nTo install internally released version via drat:\n```r\n# install.packages(\"drat\") # (if needed)\ndrat:::add(\"mrc-ide\")\ninstall.packages(\"specio\")\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmrc-ide%2Fspecio","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmrc-ide%2Fspecio","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmrc-ide%2Fspecio/lists"}