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Makes primary clusters (v1.1.1 confirmed works)\n* [MUMmer](http://mummer.sourceforge.net/) - Performs default ANIm comparison method (v3.23 confirmed works)\n\n### Optional\n\n* [fastANI](https://github.com/ParBLiSS/FastANI) - A fast secondary clustering algorithm\n* [CheckM](http://ecogenomics.github.io/CheckM/)_ - Determines contamination and completeness of genomes (v1.0.7 confirmed works)\n* [gANI (aka ANIcalculator)](https://ani.jgi-psf.org/html/download.php?) - Performs gANI comparison method (v1.0 confirmed works)\n* [Prodigal](http://prodigal.ornl.gov/) - Used be both checkM and gANI (v2.6.3 confirmed works)\n* [NSimScan](https://pubmed.ncbi.nlm.nih.gov/27153714/) - Only needed for goANI algorithm (open source version of gANI)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmrolm%2Fdrep","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmrolm%2Fdrep","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmrolm%2Fdrep/lists"}