{"id":24182997,"url":"https://github.com/ms609/oreillyetal2016","last_synced_at":"2025-07-17T17:40:34.417Z","repository":{"id":90542409,"uuid":"158211976","full_name":"ms609/OReillyEtAl2016","owner":"ms609","description":"Data generated from O'Reilly et al. (2016). See Readme below for documentation.","archived":false,"fork":false,"pushed_at":"2024-02-29T11:05:36.000Z","size":20136,"stargazers_count":0,"open_issues_count":3,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-13T08:47:09.554Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://ms609.github.io/OReillyEtAl2016/","language":"Perl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ms609.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-11-19T11:39:57.000Z","updated_at":"2024-02-29T10:56:58.000Z","dependencies_parsed_at":null,"dependency_job_id":"49be7260-b6c8-4c07-893e-8d7c73f32978","html_url":"https://github.com/ms609/OReillyEtAl2016","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FOReillyEtAl2016","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FOReillyEtAl2016/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FOReillyEtAl2016/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FOReillyEtAl2016/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ms609","download_url":"https://codeload.github.com/ms609/OReillyEtAl2016/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241577072,"owners_count":19984940,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-13T08:45:57.918Z","updated_at":"2025-03-02T21:46:37.139Z","avatar_url":"https://github.com/ms609.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"# OReillyEtAl2016\n\nThis R package provides data and analyses that accompany the paper\n\n- Martin R. Smith (2019), Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets, _Biological Letters_, 15:20180632.\ndoi:[10.1098/rsbl.2018.0632](https://dx.doi.org/10.1098/rsbl.2018.0632)\n\nIt incorporates data from:\n\n- O’Reilly, J. E., M. N. Puttick, L. Parry, A. R. Tanner, J. E. Tarver, J. Fleming, D. Pisani, and P. C. J. Donoghue. 2016. Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data. Biology Letters, 12:20160081. doi:[10.1098/rsbl.2016.0081](https://dx.doi.org/10.1098/rsbl.2016.0081).\n\n- O’Reilly, J. E., M. N. Puttick, L. Parry, A. R. Tanner, J. E. Tarver, J. Fleming, D. Pisani, and P. C. J. Donoghue. 2016. Data from: Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data. Dryad Digital Repository, doi:[10.5061/dryad.10qf3](https://dx.doi.org/10.5061/dryad.10qf3).\n\nEquivalent data and analyses from data simulated by Congreve \u0026 Lamsdell (2016) \nare available at [ms609.github.io/CongreveLamsdell2016](https://ms609.github.io/CongreveLamsdell2016).\n\nThe documentation has not yet been thoroughly checked for typographical errors; \nif you find any issues, paritcularly in the installation instructions, please\n[let me know](https://github.com/ms609/OReillyEtAl2016/issues/new) so I can \naddress them.\n\n## Installation \n\nInstall the package in `R` with:\n`devtools::install_github('ms609/OReillyEtAl2016')`.\n\n## Documentation\n\nThe package contains \n[HTML](https://ms609.github.io/OReillyEtAl2016/Conduct-analyses.html) and\n[PDF](https://ms609.github.io/OReillyEtAl2016/Conduct-analyses.pdf) files\ndetailing how analyses were conducted, to facilitate reprodution of results.\n\nThe `R` data objects can be analysed using the code and procedures detailed\nfor the analagous datasets at https://github.com/ms609/CongreveLamsdell2016.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fms609%2Foreillyetal2016","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fms609%2Foreillyetal2016","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fms609%2Foreillyetal2016/lists"}