{"id":24182991,"url":"https://github.com/ms609/treedistdata","last_synced_at":"2025-08-25T00:34:24.980Z","repository":{"id":52173788,"uuid":"196380775","full_name":"ms609/TreeDistData","owner":"ms609","description":"Data and vignettes to accompany TreeDist packages","archived":false,"fork":false,"pushed_at":"2024-06-21T08:41:01.000Z","size":357868,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-01-13T08:47:09.486Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://ms609.github.io/TreeDistData/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ms609.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":"CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":"codemeta.json"}},"created_at":"2019-07-11T11:23:58.000Z","updated_at":"2024-06-21T08:41:04.000Z","dependencies_parsed_at":"2025-01-13T08:46:06.465Z","dependency_job_id":"7d58e05d-b966-45ed-8517-15f3dfcbe2b6","html_url":"https://github.com/ms609/TreeDistData","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FTreeDistData","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FTreeDistData/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FTreeDistData/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ms609%2FTreeDistData/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ms609","download_url":"https://codeload.github.com/ms609/TreeDistData/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":241577072,"owners_count":19984940,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-13T08:45:56.428Z","updated_at":"2025-03-02T21:46:36.690Z","avatar_url":"https://github.com/ms609.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# TreeDistData\n\n[![Project Status: Inactive – The project has reached a stable, usable state but is no longer being actively developed; support/maintenance will be provided as time allows.](http://www.repostatus.org/badges/latest/inactive.svg)](http://www.repostatus.org/#inactive)\n[![Build status](https://github.com/ms609/TreeDistData/actions/workflows/pkgdown.yml/badge.svg)](https://github.com/ms609/TreeDistData/actions/)\n[![CRAN Status Badge](http://www.r-pkg.org/badges/version/TreeDistData)](https://cran.r-project.org/package=TreeDistData)\n[![DOI](https://zenodo.org/badge/196380775.svg)](https://zenodo.org/badge/latestdoi/196380775)\n\n'[TreeDistData](https://ms609.github.io/TreeDistData/)' is an R package \nintended to accompany the '[TreeDist](https://ms609.github.io/TreeDist/)' \npackage. It contains the functions and scripts used to compare the performance \nof tree distance measures in Smith (2020).\n\n\"[Articles](https://ms609.github.io/TreeDistData/articles/)\" lists vignettes\ndetailing the output of analyses corresponding\nto the stated sections of Smith (2020).  Each of these pages includes a\nlink to the R source code, which can be used to reproduce the analytical\nresults.\n\n\"[Reference](https://ms609.github.io/TreeDistData/reference/)\" lists\nconvenience functions, which facilitate calls to 'TreeDist', and data objects \nthat store the results of lengthy analyses.  The code used to generate\nthese data objects is available in the\n[`data-raw`](https://github.com/ms609/TreeDistData/tree/master/data-raw)\ndirectory.\n\n\n## References\n\nSmith, M.R. (2020). [Information theoretic Generalized Robinson-Foulds metrics\n  for comparing phylogenetic trees](https://dx.doi.org/10.1093/bioinformatics/btaa614).\n  _Bioinformatics_ 36: 5007–5013.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fms609%2Ftreedistdata","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fms609%2Ftreedistdata","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fms609%2Ftreedistdata/lists"}