{"id":24529899,"url":"https://github.com/mschubert/ebits","last_synced_at":"2025-04-14T17:37:38.585Z","repository":{"id":15935927,"uuid":"18678011","full_name":"mschubert/ebits","owner":"mschubert","description":"R bioinformatics toolkit incubator","archived":false,"fork":false,"pushed_at":"2025-01-20T12:26:22.000Z","size":743,"stargazers_count":6,"open_issues_count":18,"forks_count":3,"subscribers_count":41,"default_branch":"master","last_synced_at":"2025-01-20T13:35:10.011Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mschubert.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-04-11T15:03:11.000Z","updated_at":"2025-01-20T12:26:24.000Z","dependencies_parsed_at":"2024-02-26T21:46:43.673Z","dependency_job_id":"e4efc64a-eb29-4156-a087-57faad8cf6ea","html_url":"https://github.com/mschubert/ebits","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2Febits","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2Febits/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2Febits/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2Febits/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mschubert","download_url":"https://codeload.github.com/mschubert/ebits/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":235082228,"owners_count":18932920,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-22T07:53:01.853Z","updated_at":"2025-01-22T07:53:02.403Z","avatar_url":"https://github.com/mschubert.png","language":"R","readme":"ebits: bioinformatics-related R modules\n=======================================\n\n[![Build Status](https://github.com/mschubert/ebits/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/mschubert/ebits/actions)\n\nThis repository is meant as a collection of bioinformatics-related R\ncode that simplify workflows and can be shared with other people.\n\nFor details, see the `README.md` files and API documentation in the respective\ndirectories.\n\nRequirements\n------------\n\nThis collection of tools requires `modules`, install using using `devtools`:\n\n```r\n# install.packages('devtools')\ndevtools::install_github('klmr/modules')\n```\n\nThe scripts also depend on a range of R packages. If using only a few modules,\nyou may want to install only the packages you need. Otherwise you can\nlist/install all of them by typing:\n\n```sh\n./dependencies.sh # list all packages\nmake install-deps # install all packages (warning: there's a lot)\n```\n\nSetup\n-----\n\n```bash\ncd your_local_directory\ngit clone https://github.com/EBI-predocs/ebits.git\ncd ebits \u0026\u0026 git submodule --init --recursive\n```\n\nAdditionally, you need load the `modules` package and tell R where to find the\n`ebits` module. In order to do this, set your `import.path` in your\n*~/.Rprofile*:\n\n```r\nlibrary(modules) # can also load manually\noptions(import.path=c(\"/path/to/ebits\",\n                      \"/path/to/other/module\")\n```\n\nUsage\n-----\n\nModules can be imported and used as described in the\n[`modules` documentation](https://github.com/klmr/modules)\n\n```r\nmod = import('module') # imports the module\nmod$func(x=5)          # calls the module function\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmschubert%2Febits","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmschubert%2Febits","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmschubert%2Febits/lists"}