{"id":24529934,"url":"https://github.com/mschubert/r-hpc","last_synced_at":"2026-01-02T07:56:22.721Z","repository":{"id":43094815,"uuid":"466261900","full_name":"mschubert/R-hpc","owner":"mschubert","description":null,"archived":false,"fork":false,"pushed_at":"2022-04-04T13:10:49.000Z","size":17055,"stargazers_count":2,"open_issues_count":0,"forks_count":5,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-22T07:53:00.493Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://mschubert.github.io/R-hpc","language":"Makefile","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mschubert.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2022-03-04T20:29:01.000Z","updated_at":"2024-11-22T13:00:15.000Z","dependencies_parsed_at":"2022-08-19T14:41:28.496Z","dependency_job_id":null,"html_url":"https://github.com/mschubert/R-hpc","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2FR-hpc","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2FR-hpc/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2FR-hpc/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mschubert%2FR-hpc/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mschubert","download_url":"https://codeload.github.com/mschubert/R-hpc/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243770839,"owners_count":20345356,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-22T07:53:06.248Z","updated_at":"2026-01-02T07:56:22.694Z","avatar_url":"https://github.com/mschubert.png","language":"Makefile","funding_links":[],"categories":[],"sub_categories":[],"readme":"# High Performance Computing with the R programming language\n\nBelow is a brief overview of the course content.\n\n## Day 1\n\n#### Morning: Technical Introduction by HPC admins\n\n* Capabilities of the computing cluster\n* How to connect\n* Starting a basic job\n\n#### Afternoon: [Quick Start](https://mschubert.github.io/R-hpc/articles/quickstart.html)\n\n* Copying and editing files via the command-line\n* Interactive jobs, batch jobs\n* `parallel` package, cluster objects, and `future`\n\n#### Afternoon: [Neovim as IDE](https://mschubert.github.io/R-hpc/articles/neovim-ide.html)\n\n* The `Nvim-R` plugin to interactively develop in a remote session\n* Persistent server sessions using `tmux`\n\n## Day 2\n\n#### Morning: [Breakpoint example](https://mschubert.github.io/R-hpc/articles/breakpt-ex.html)\n\n* An MCMC breakpoint detection method as example\n* Tasks vs. threads for bigger jobs\n* R packages for HPC use: `slurmR` and `clustermq`\n\n#### Afternoon: [Workflows](https://mschubert.github.io/R-hpc/articles/workflows.html)\n\n* GNU parallel and GNU make\n* Snakemake\n* The `targets` R package\n\n#### Afternoon: \n\n* Possibility for attendees to work on their own projects with help from the instructors\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmschubert%2Fr-hpc","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmschubert%2Fr-hpc","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmschubert%2Fr-hpc/lists"}