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https://travis-ci.com/msk-access/merge_fastq.svg?branch=master\n    :target: https://travis-ci.com/msk-access/merge_fastq\n\n.. image:: https://readthedocs.org/projects/merge-fastq/badge/?version=latest\n        :target: https://merge-fastq.readthedocs.io/en/latest/?badge=latest\n        :alt: Documentation Status\n\n\n.. image:: https://pyup.io/repos/github/msk-access/merge_fastq/shield.svg\n     :target: https://pyup.io/repos/github/msk-access/merge_fastq/\n     :alt: Updates\n\n\n\nPackage to merge multiple pair of pair-end fastq data\n\n\n* Free software: Apache Software License 2.0\n* Documentation: https://merge-fastq.readthedocs.io.\n\n\nFeatures\n--------\n\n* Given multiple pair-end fastq data merge them into single pair-end fastq w.r.t each READ1 and READ2 \n\nUsage\n-----\n\n\u003e merge_fastq --help\n\nUsage: merge_fastq [OPTIONS]\n\n  Console script for merge_fastq.\n\nOptions:\n  -fp1, --fastq1 PATH      Full path to gziped READ1 fastq files, can be\n                           specified multiple times for example: --fastq1\n                           test_part1_R1.fastq.gz --fastq1\n                           test_part2_R1.fastq.gz  [required]\n  -fp2, --fastq2 PATH      Full path to gziped READ2 fastq files, can be\n                           specified multiple times for example: --fastq2\n                           test_part1_R2.fastq.gz --fastq2\n                           test_part2_R2.fastq.gz  [required]\n  -op, --output-path PATH  Full path to write the output files (default:\n                           Current working directory)\n  -of1, --out-fastq1 TEXT  Name of the merged output READ1 fastq file\n                           (default: merged_fastq_R1.fastq.gz)\n  -of2, --out-fastq2 TEXT  Name of the merged output READ2 fastq file\n                           (default: merged_fastq_R2.fastq.gz)\n  --help                   Show this message and exit.\n\nCredits\n-------\n\nThis package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.\n\n.. _Cookiecutter: https://github.com/audreyr/cookiecutter\n.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmsk-access%2Fmerge_fastq","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmsk-access%2Fmerge_fastq","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmsk-access%2Fmerge_fastq/lists"}