{"id":19749633,"url":"https://github.com/mskcc/cmo","last_synced_at":"2025-09-02T02:40:29.595Z","repository":{"id":35564287,"uuid":"39836248","full_name":"mskcc/cmo","owner":"mskcc","description":"Command-line tools for data analysts at the CMO","archived":false,"fork":false,"pushed_at":"2023-06-22T09:39:36.000Z","size":2219,"stargazers_count":7,"open_issues_count":1,"forks_count":13,"subscribers_count":75,"default_branch":"master","last_synced_at":"2025-04-30T09:49:45.257Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mskcc.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-07-28T13:43:17.000Z","updated_at":"2021-12-11T04:55:49.000Z","dependencies_parsed_at":"2025-04-30T09:55:57.623Z","dependency_job_id":null,"html_url":"https://github.com/mskcc/cmo","commit_stats":null,"previous_names":[],"tags_count":45,"template":false,"template_full_name":null,"purl":"pkg:github/mskcc/cmo","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fcmo","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fcmo/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fcmo/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fcmo/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mskcc","download_url":"https://codeload.github.com/mskcc/cmo/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fcmo/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273222132,"owners_count":25066702,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-02T02:00:09.530Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-12T02:27:34.307Z","updated_at":"2025-09-02T02:40:29.551Z","avatar_url":"https://github.com/mskcc.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"## For users of the luna cluster at MSKCC CMO\n\nAdd this to your `~/.profile` to get access to the `cmo_*` and `cmoflow_*` tools:\n```bash\n# Set PATH to include MSKCC's bin of tools, if found\nif [ -d \"/opt/common/CentOS_6-dev/bin/current\" ]; then\n    PATH=\"/opt/common/CentOS_6-dev/bin/current:$PATH\"\nfi\n\n# Set PATH to include MSKCC's bin of python tools, if found\nif [ -d \"/opt/common/CentOS_6-dev/python/python-2.7.10/bin\" ]; then\n    PATH=\"/opt/common/CentOS_6-dev/python/python-2.7.10/bin:$PATH\"\nfi\n```\n\nDocumentation [lives here](http://plvcbiocmo2.mskcc.org), and running workflows can be [tracked here](https://haystack.mskcc.org/workflows).\n\n## For external users\n\nHere is how to install these tools without sudo rights:\n```bash\ncurl -LO https://github.com/mskcc/cmo/archive/master.zip\nunzip master.zip\ncd cmo-master\npython setup.py install --user\n```\n\nAdd this to your `~/.profile` to get access to the `cmo_*` and `cmoflow_*` tools:\n```bash\n# Set PATH to include local python bin if found\nif [ -d \"$HOME/.local/bin\" ]; then\n    PATH=\"$HOME/.local/bin:$PATH\"\nfi\n```\n\n## For all other users\n![Data Yes!](http://33.media.tumblr.com/560c6bd597ab217cec337b24e66ddf5e/tumblr_nsjtulCu5G1s391qwo1_400.gif)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmskcc%2Fcmo","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmskcc%2Fcmo","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmskcc%2Fcmo/lists"}