{"id":19749546,"url":"https://github.com/mskcc/pipeline-kickoff","last_synced_at":"2025-07-28T00:10:07.335Z","repository":{"id":75108495,"uuid":"96565909","full_name":"mskcc/pipeline-kickoff","owner":"mskcc","description":null,"archived":false,"fork":false,"pushed_at":"2022-03-09T18:59:32.000Z","size":1180,"stargazers_count":1,"open_issues_count":7,"forks_count":0,"subscribers_count":10,"default_branch":"master","last_synced_at":"2025-02-28T08:28:47.864Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mskcc.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-07-07T18:27:34.000Z","updated_at":"2019-11-19T17:02:26.000Z","dependencies_parsed_at":"2023-03-06T02:15:14.664Z","dependency_job_id":null,"html_url":"https://github.com/mskcc/pipeline-kickoff","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/mskcc/pipeline-kickoff","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fpipeline-kickoff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fpipeline-kickoff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fpipeline-kickoff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fpipeline-kickoff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mskcc","download_url":"https://codeload.github.com/mskcc/pipeline-kickoff/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2Fpipeline-kickoff/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":267442480,"owners_count":24087806,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-07-27T02:00:11.917Z","response_time":82,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-12T02:27:11.820Z","updated_at":"2025-07-28T00:10:07.284Z","avatar_url":"https://github.com/mskcc.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# pipeline-kickoff\n\nhttp://plvpipetrack1.mskcc.org:8099/display/PipelineInitiation/Analysis+Pipeline+Initiation+Home\n\nPipeline kickoff gathers information from LIMS (using LIMS API) and file system and creates manifest files which are used by analysis pipeline. \nThis code is run as a cron job retrieving recently delivered requests for which those files can be generated.\n\n### Latest Versions\nThe latest release version is `1.1.9` for `BIC`, `1.25.2` for `ROSLIN`. \n\n**NOTE**\n* Code base was inherited from `BIC` and needs refactoring and better test coverage.\n* The combination of `BIC` and `ROSLIN` is in branch [`SAP-296-combine-bic-and-roslin-branch`](https://github.com/mskcc/pipeline-kickoff/tree/SAP-296-combine-bic-and-roslin-branch), which combines bic (`tag: v1.1.9-bic`) and rolsin (`tag: v1.25.2-roslin`) branch.\n\n### Arguments\n* `-p, PROJECT_ID`. e.g. `-p 12345_A`\n* `-e`. run as exome\n* `-f`. force generation of files even when there are errors\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmskcc%2Fpipeline-kickoff","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmskcc%2Fpipeline-kickoff","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmskcc%2Fpipeline-kickoff/lists"}