{"id":31135796,"url":"https://github.com/mstorath/dcebe","last_synced_at":"2025-09-18T07:36:21.806Z","repository":{"id":178174258,"uuid":"156219096","full_name":"mstorath/DCEBE","owner":"mstorath","description":"Estimation of bolus arrival times for DCE-MRI signals","archived":false,"fork":false,"pushed_at":"2025-01-10T10:02:25.000Z","size":241,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-01-10T11:23:21.876Z","etag":null,"topics":["bolus-arrival-time","dce-mri","splines"],"latest_commit_sha":null,"homepage":"","language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mstorath.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-11-05T13:05:17.000Z","updated_at":"2025-01-10T10:02:28.000Z","dependencies_parsed_at":"2023-07-13T23:45:09.823Z","dependency_job_id":null,"html_url":"https://github.com/mstorath/DCEBE","commit_stats":null,"previous_names":["mstorath/dcebe"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/mstorath/DCEBE","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mstorath%2FDCEBE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mstorath%2FDCEBE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mstorath%2FDCEBE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mstorath%2FDCEBE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mstorath","download_url":"https://codeload.github.com/mstorath/DCEBE/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mstorath%2FDCEBE/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":275730942,"owners_count":25518085,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-18T02:00:09.552Z","response_time":77,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bolus-arrival-time","dce-mri","splines"],"created_at":"2025-09-18T07:36:19.390Z","updated_at":"2025-09-18T07:36:21.798Z","avatar_url":"https://github.com/mstorath.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Bolus arrival time estimation for DCE-MRI signals (DCEBE)\n\n## Description\nThis Matlab code estimates the bolus arrival time (BAT) of DCE-MRI signals.\nIt is particularly intended to work with signals that do not have a fast upslope\nas it is often the case for data of small animals.\nThe proposed method employs a spline-based approximation model.\nParameter estimation is done by generalized cross validation.\n\nA detailed documentation of the method is given in\nthe paper A. Bendinger, C. Debus, C. Glowa, C. Karger, J. Peter, M. Storath,\n[Bolus arrival time estimation in dynamic contrast-enhanced MRI of small animals based on spline models,](https://doi.org/10.1088/1361-6560/aafce7)\nPhysics in Medicine \u0026 Biology, Volume 64, Number 4, 2019. \n[preprint link](https://arxiv.org/pdf/1811.10672.pdf). [![View DCEBE on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://de.mathworks.com/matlabcentral/fileexchange/69526-dcebe)\n\n\u003cimg src=\"docs/example.png\" width=\"80%\"\u003e\n\n## Quickstart\n- Run \"DCEC_install.m\" or add subfolders manually to Matlab path \n- Run a demo script from the demos folder, e.g. \"DCEBE_demo.m\"\n\n## How to cite\nThe method is described in the paper\n\n- A. Bendinger, C. Debus, C. Glowa, C. Karger, J. Peter, M. Storath,\n[Bolus arrival time estimation in dynamic contrast-enhanced MRI of small animals based on spline models](https://doi.org/10.1088/1361-6560/aafce7)\nPhysics in Medicine \u0026 Biology, Volume 64, Number 4, 2019\n\n\n## Acknowledgement \nThanks to T. Driscoll for sharing his code for [computing finite difference weights.](https://de.mathworks.com/matlabcentral/fileexchange/13878-finite-difference-weights)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmstorath%2Fdcebe","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmstorath%2Fdcebe","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmstorath%2Fdcebe/lists"}