{"id":32601405,"url":"https://github.com/mullinslab/isdb","last_synced_at":"2026-03-03T22:31:12.839Z","repository":{"id":79269390,"uuid":"82347990","full_name":"MullinsLab/ISDB","owner":"MullinsLab","description":"A toolkit for creating databases of viral integration sites in host genomes","archived":false,"fork":false,"pushed_at":"2018-05-30T23:37:54.000Z","size":58121,"stargazers_count":3,"open_issues_count":1,"forks_count":4,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-12-08T11:47:55.341Z","etag":null,"topics":["bioinformatics","database","database-management","hiv","provirus","virus","virus-integration"],"latest_commit_sha":null,"homepage":"https://mullinslab.microbiol.washington.edu/isdb/","language":"Perl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MullinsLab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-02-17T23:48:59.000Z","updated_at":"2022-08-10T20:42:58.000Z","dependencies_parsed_at":"2023-02-28T20:46:01.744Z","dependency_job_id":null,"html_url":"https://github.com/MullinsLab/ISDB","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/MullinsLab/ISDB","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MullinsLab%2FISDB","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MullinsLab%2FISDB/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MullinsLab%2FISDB/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MullinsLab%2FISDB/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MullinsLab","download_url":"https://codeload.github.com/MullinsLab/ISDB/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MullinsLab%2FISDB/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30064281,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-03T18:21:05.932Z","status":"ssl_error","status_checked_at":"2026-03-03T18:20:59.341Z","response_time":61,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","database","database-management","hiv","provirus","virus","virus-integration"],"created_at":"2025-10-30T07:57:17.442Z","updated_at":"2026-03-03T22:31:12.820Z","avatar_url":"https://github.com/MullinsLab.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ISDB is an open-source software toolkit for building databases of proviral integration sites.\n\nUsing ISDB, you can curate a private database from any heterogenous set of data\nsources, including previously-published datasets and internal, work-in-progress\ndata.  To make data visible and accessible to collaborators with varying\ndegrees of computational expertise, ISDB automatically generates web sites\ndescribing database contents and data exports in several common formats.\n\nAs distinct from a public depository database, the ability to build local,\nprivate databases makes ISDB suitable for use in testing hypotheses and\ndeveloping analyses in the long pre-publication phase of most research.  The\ngoal of ISDB is to provide a standard end-to-end platform for reliably storing,\nperforming reproducible analyses on, and ultimately publishing integration site\ndata.\n\nWe developed ISDB to support our research into the locations of HIV-1 proviral\nintegrations in patients on suppressive ART. It helps us __durably store and\nreliably manage the data we generate__ and provides __a standard platform for\nour analyses across datasets__.\n\n[HIRIS][], our HIV-1 Reservoirs Integration Sites database, is built and\npublished using ISDB.\n\nPlease see the [ISDB website][] for more information, including [how to get\nstarted][] and [other documentation][].\n\n[ISDB website]: https://mullinslab.microbiol.washington.edu/isdb/\n[HIRIS]: https://mullinslab.microbiol.washington.edu/hiris/\n[how to get started]: https://mullinslab.microbiol.washington.edu/isdb/doc/Getting-started.html\n[other documentation]: https://mullinslab.microbiol.washington.edu/isdb/doc/\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmullinslab%2Fisdb","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmullinslab%2Fisdb","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmullinslab%2Fisdb/lists"}