{"id":30181247,"url":"https://github.com/multiomics-analytics-group/airbiome_microb_asso_net_report","last_synced_at":"2026-02-22T12:48:15.772Z","repository":{"id":309242476,"uuid":"1035569929","full_name":"Multiomics-Analytics-Group/airbiome_microb_asso_net_report","owner":"Multiomics-Analytics-Group","description":"This repository contains a summary of the main results for the microbial association networks from the AirBiome project. 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The reports \nwere generated using [VueGen](https://github.com/Multiomics-Analytics-Group/vuegen), a tool to automate the creation of scientific reports.\n\n## Online Reports\n\nThe reports generated for this project are available online:\n\n[![HTML5](https://img.shields.io/badge/html5-%23E34F26.svg?style=for-the-badge\u0026logo=html5\u0026logoColor=white)][html-report]\n[![Streamlit](https://img.shields.io/badge/Streamlit-%23FE4B4B.svg?style=for-the-badge\u0026logo=streamlit\u0026logoColor=white)][streamlit-report]    \n\n## Run the Reports locally\n\n### Streamlit Report\n\nTo run the Streamlit report, ensure you have the required dependencies installed, then navigate to the `streamlit_report` directory and run the main script.\n\n```bash\ncd streamlit_report\npip install -r requirements.txt\nstreamlit run sections/report_manager.py\n```\n\n### Quarto Reports\n\nThe HTML and Reveal.js reports in the `quarto_report` directory can be viewed directly in a web browser.\n\n## Scripts, Data and Raw Outputs\n\nThe scripts, data, and raw outputs used to generate these reports are available in this [repository](https://github.com/Multiomics-Analytics-Group/airbiome).\n\n## Project Structure\n\nThe repository is organized as follows:\n\n| Folder | Description |\n|---|---|\n| `AirBiome_microbial_association_networks_summary/` | Contains all the data and raw outputs from the analysis. |\n| `streamlit_report/` | Contains the scripts for a Streamlit report. This interactive report allows for dynamic exploration of the output. |\n| `quarto_report/` | Includes HTML and Reveal.js reports. |\n| `airbiome_microbial_association_networks_summary_config.yaml` | Configuration file for the VueGen report generation, which can be extended with additional information. |\n| `Network_visualizations_cytoscape/` | Holds Cytoscape session files for detailed network visualizations of adjacency and association networks. |\n\n[html-report]: https://multiomics-analytics-group.github.io/airbiome_microb_asso_net_report/\n[streamlit-report]: https://airbiome-microb-ass-net-summary.streamlit.app/","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmultiomics-analytics-group%2Fairbiome_microb_asso_net_report","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmultiomics-analytics-group%2Fairbiome_microb_asso_net_report","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmultiomics-analytics-group%2Fairbiome_microb_asso_net_report/lists"}