{"id":20968346,"url":"https://github.com/munishchouhan/nf-test-pipeline","last_synced_at":"2026-02-07T06:02:57.325Z","repository":{"id":197761508,"uuid":"699282028","full_name":"munishchouhan/nf-test-pipeline","owner":"munishchouhan","description":"nextflow pipeline for test","archived":false,"fork":false,"pushed_at":"2024-04-16T11:41:07.000Z","size":6,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-01-20T02:45:02.986Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/munishchouhan.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-10-02T10:16:57.000Z","updated_at":"2023-10-02T10:19:25.000Z","dependencies_parsed_at":"2025-01-20T02:41:24.004Z","dependency_job_id":"4aae15d4-f00e-4c36-af26-2f5d42a0abee","html_url":"https://github.com/munishchouhan/nf-test-pipeline","commit_stats":null,"previous_names":["munishchouhan/nf-test-pipeline"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/munishchouhan%2Fnf-test-pipeline","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/munishchouhan%2Fnf-test-pipeline/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/munishchouhan%2Fnf-test-pipeline/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/munishchouhan%2Fnf-test-pipeline/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/munishchouhan","download_url":"https://codeload.github.com/munishchouhan/nf-test-pipeline/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243365560,"owners_count":20279212,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-19T03:10:48.610Z","updated_at":"2025-03-13T07:42:44.839Z","avatar_url":"https://github.com/munishchouhan.png","language":"Nextflow","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Build and deliver Nextflow module containers\n\n### Summary \n\nThis example shows how to associate a Dockerfile with a Nextflow module.\n\nWhen executing a pipeline script enabling the Wave plugin, the Dockerfile \nis uploaded to the Wave service, a container is built on-the-fly, and pushed to\na temporary repository. The container name is automatically included in the \nprocess execution and used to run the task.\n\n### Pipeline script \n\nThe pipeline script includes a simple module and uses it in the workflow:\n\n```nextflow\ninclude { hello } from './modules/foo'\n\nworkflow {\n  hello()\n}\n\n```\n\n### Module script \n\n```nextflow\nprocess hello {\n  debug true\n  \"\"\"\n  cowsay Hello Summit! \n  \"\"\"\n}\n\n```\n\nNote: the process does not need to declare any `container` to used. Instead, a `Dockerfile` is included in the module directory.\n\n### Dockerfile \n\nThe Dockerfile defines the software to be installed.\n\n```Dockerfile\nFROM alpine \n\nRUN apk update \u0026\u0026 apk add bash cowsay \\\n        --update-cache \\\n        --repository https://alpine.global.ssl.fastly.net/alpine/edge/community \\\n        --repository https://alpine.global.ssl.fastly.net/alpine/edge/main \\\n        --repository https://dl-3.alpinelinux.org/alpine/edge/testing\n\n```\n\n\n### Run it \n\n```bash\nnextflow run main.nf -with-wave\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmunishchouhan%2Fnf-test-pipeline","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmunishchouhan%2Fnf-test-pipeline","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmunishchouhan%2Fnf-test-pipeline/lists"}