{"id":26329162,"url":"https://github.com/murrellgroup/colabmolecularevolution","last_synced_at":"2025-10-09T00:07:55.871Z","repository":{"id":269501462,"uuid":"907602600","full_name":"MurrellGroup/ColabMolecularEvolution","owner":"MurrellGroup","description":"A collection of Google Colab notebooks for phylogenetic models","archived":false,"fork":false,"pushed_at":"2025-05-14T08:07:29.000Z","size":7745,"stargazers_count":0,"open_issues_count":1,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-07-11T16:03:54.142Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/MurrellGroup.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-12-24T01:11:39.000Z","updated_at":"2025-05-14T08:07:32.000Z","dependencies_parsed_at":null,"dependency_job_id":"9185f325-cc18-41d3-abe5-882b40d0d5c6","html_url":"https://github.com/MurrellGroup/ColabMolecularEvolution","commit_stats":null,"previous_names":["murrellgroup/colabmolecularevolution"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/MurrellGroup/ColabMolecularEvolution","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MurrellGroup%2FColabMolecularEvolution","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MurrellGroup%2FColabMolecularEvolution/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MurrellGroup%2FColabMolecularEvolution/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MurrellGroup%2FColabMolecularEvolution/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/MurrellGroup","download_url":"https://codeload.github.com/MurrellGroup/ColabMolecularEvolution/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MurrellGroup%2FColabMolecularEvolution/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":279000744,"owners_count":26082879,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-08T02:00:06.501Z","response_time":56,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-03-15T21:19:38.996Z","updated_at":"2025-10-09T00:07:55.838Z","avatar_url":"https://github.com/MurrellGroup.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# ColabMolecularEvolution\nA collection of Google Colab notebooks for phylogenetic models implemented in [MolecularEvolution.jl](https://github.com/MurrellGroup/MolecularEvolution.jl) so you can test our models in the cloud.\n\n# Available notebooks:\n### difFUBAR - comparing selection on predefined clades\n\u003ca href=\"https://colab.research.google.com/github/MurrellGroup/ColabMolecularEvolution/blob/main/notebooks/difFUBAR.ipynb\"\u003e\n  \u003cimg src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/\u003e\n\u003c/a\u003e\n\n### FUBAR - a fast Bayesian approach for identifying sites under pervasive positive or purifying selection.\n\u003ca href=\"https://colab.research.google.com/github/MurrellGroup/ColabMolecularEvolution/blob/main/notebooks/FUBAR.ipynb\"\u003e\n  \u003cimg src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/\u003e\n\u003c/a\u003e\n\n# Instructions\nGoogle Colab usually runs python, so these all require three initial steps to install Julia, and switch to using the Julia kernel. The specific instructions are at the top of each notebook.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmurrellgroup%2Fcolabmolecularevolution","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmurrellgroup%2Fcolabmolecularevolution","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmurrellgroup%2Fcolabmolecularevolution/lists"}