{"id":17271014,"url":"https://github.com/muschellij2/open_neuro","last_synced_at":"2026-01-06T22:08:18.724Z","repository":{"id":151869187,"uuid":"46067501","full_name":"muschellij2/open_neuro","owner":"muschellij2","description":"Open Neuroimaging Datasets","archived":false,"fork":false,"pushed_at":"2015-11-12T21:08:16.000Z","size":0,"stargazers_count":21,"open_issues_count":0,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-31T13:29:18.734Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/muschellij2.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-11-12T17:01:44.000Z","updated_at":"2024-11-18T15:10:27.000Z","dependencies_parsed_at":"2023-05-22T15:15:50.238Z","dependency_job_id":null,"html_url":"https://github.com/muschellij2/open_neuro","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/muschellij2%2Fopen_neuro","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/muschellij2%2Fopen_neuro/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/muschellij2%2Fopen_neuro/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/muschellij2%2Fopen_neuro/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/muschellij2","download_url":"https://codeload.github.com/muschellij2/open_neuro/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245651318,"owners_count":20650267,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-15T08:22:02.445Z","updated_at":"2026-01-06T22:08:18.679Z","avatar_url":"https://github.com/muschellij2.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Open Neuroimaging Datasets\n\n* Acronyms:\n    * Imaging Modalities:\n        * MRI (Magnetic Resonance Imaging)\n            * if imaging modality is MRI with no prefix (such as f, for fMRI), this refers to structrual MRI (sMRI)\n        * fMRI - functional MRI\n        * dMRI - diffusion MRI\n        * DTI - Diffusion Tensor Imaging, a type of diffusion MRI\n        * PET - Positron Emission Tomography\n        * CT - X-ray Computed Tomography\n        * MEG - Magnetoencephalography\n        * MRA - Magnetic Resonance Angiogram \n    * Imaging Sequences:\n        * T1/T1w - [T1-weighted imaging](http://radiopaedia.org/articles/t1-weighted-image)\n        * T2/T2w - [T2-weighted imaging](http://radiopaedia.org/articles/t2-weighted-image)\n        * PD - proton density\n        * FLAIR - Fluid-attenuated inversion recovery, a T2-weighted modality\n    * Diseases\n        * TBI - Traumatic Brain Injury\n        * AD - Alzheimer's Disease (most likely) or Autism Disorder (usually in child data sets)\n        * MCI - Mild Cognitive Impairment\n        * ADHD - Attention Deficit Hyperactivity Disorder\n        * \n\n\n## Overall Repositories\n* [NITRC (Neuroimaging Informatics Tools and Resources Clearinghouse)](https://www.nitrc.org/)\n    * [NITRC Data Resources](https://www.nitrc.org/search/?type_of_search=group\u0026cat=325:Data)\n    * Look at F1000\n\n## MRI\n* [IXI Datasets](https://biomedic.doc.ic.ac.uk/brain-development/index.php?n=Main.Datasets)\n    * 600 MR images from normal, healthy subjects. * The MR image acquisition protocol for each subject includes:\n    * T1, T2 and PD-weighted images\n    * MRA images\n    * Diffusion-weighted images (15 directions)\n\n* [LONI Datasets](https://ida.loni.usc.edu/services/Menu/IdaData.jsp)\n    * International Consortium for Brain Mapping (ICBM)\n        * N = 851, Normal Controls\n        * MRI, fMRI, MRA, DTI, PET\n    * Alzheimer's Disease Neuroimaging Initiative (ADNI)\n        * N \u003e 2000, Controls, Alzheimer's Disease (AD), Mild Cognitive Impairment (MCI)\n        * MRI, PET\n    * Brain Aging in Vietnam War Veterans (ADNIDOD)\n        * N = 195, Traumatic Brain Injury (TBI), Post-traumatic stress disorder (PTSD), Controls\n        * MRI, fMRI, DTI, PET\n    * Australian Imaging Biomarkers \u0026 Lifestyle Flagship Study of Ageing (AIBL)\n        * N = 292, Controls, Alzheimer's Disease (AD), Mild Cognitive Impairment (MCI)\n        * MRI, PET\n    * Parkinson's Progression Markers Initiative (PPMI)\n        * N = 595, Controls, Parkinson's\n        * MRI, SPECT, DTI\n\n* [Human Connectome Project](http://www.humanconnectome.org/)\n    * MRI, fMRI, dMRI\n\n* [ABIDE](http://fcon_1000.projects.nitrc.org/indi/abide/)\n\n* [Beijing Normal University, State Key Laboratory of Cognitive Neuroscience and Learning Enhanced Sample](http://fcon_1000.projects.nitrc.org/indi/retro/BeijingEnhanced.html)\n    * N = 180\n    * 8-minute resting state fMRI scan (R-fMRI)\n    * MPRAGE anatomical scan, defaced to protect patient confidentiality\n    * 64-direction diffusion tensor imaging scan\n    * Demographic information and Verbal, Performance, and Full IQ as measured using the Welscher Adult Intelligence Scale Revised\n\n\n## Preprocessed MRI\n* [Preprocessed Connectomes Project](http://preprocessed-connectomes-project.github.io/datasets.html)\n    * ABIDE\n    * ADHD-200\n    * Beijing DTI\n\n## PET\n* [](http://adni.loni.usc.edu/data-samples/pet/)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmuschellij2%2Fopen_neuro","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fmuschellij2%2Fopen_neuro","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fmuschellij2%2Fopen_neuro/lists"}