{"id":30660085,"url":"https://github.com/nanoporetech/ont-output-specifications","last_synced_at":"2025-08-31T13:43:59.107Z","repository":{"id":294667853,"uuid":"928880422","full_name":"nanoporetech/ont-output-specifications","owner":"nanoporetech","description":"Specifications for output files from MinKNOW, dorado and others","archived":false,"fork":false,"pushed_at":"2025-06-05T08:44:22.000Z","size":1294,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-06-05T09:37:38.791Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nanoporetech.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-02-07T12:06:27.000Z","updated_at":"2025-06-05T08:44:25.000Z","dependencies_parsed_at":"2025-05-21T14:35:09.648Z","dependency_job_id":"77615cc8-f7ec-4d96-aca2-0ac25fa2bc9d","html_url":"https://github.com/nanoporetech/ont-output-specifications","commit_stats":null,"previous_names":["nanoporetech/ont-output-specifications"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/nanoporetech/ont-output-specifications","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Font-output-specifications","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Font-output-specifications/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Font-output-specifications/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Font-output-specifications/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nanoporetech","download_url":"https://codeload.github.com/nanoporetech/ont-output-specifications/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Font-output-specifications/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":272988783,"owners_count":25026959,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-31T02:00:09.071Z","response_time":79,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-08-31T13:43:57.980Z","updated_at":"2025-08-31T13:43:59.100Z","avatar_url":"https://github.com/nanoporetech.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Oxford Nanopore Output Specifications\n\nThis project is intended to contain parsable definitions of Oxford Nanopore software (specifically MinKNOW, Dorado, and EPI2ME) interchange formats.\n\nCurrently, this project primarily contains MinKNOW outputs. Further specifications, including additional outputs from EPI2ME and [standalone Dorado](https://github.com/nanoporetech/dorado), are planned for a future release. Until then, details of these projects can be found in the [EPI2ME Docs](https://epi2me.nanoporetech.com/epi2me-docs/quickstart/) and [Dorado Docs](https://dorado-docs.readthedocs.io/en/latest/).\n\n## Public docs\n\nThe rendered documentation is [available here](https://nanoporetech.github.io/ont-output-specifications/latest/).\n\n## Deploying new docs\n\nUse [Mike](https://github.com/jimporter/mike) to deploy a new branch.\n\nFirst ensure you are on the right branch (for example named ``release/25.03``) and the docs are correct.\n\nThen build and deploy the docs to the ``gh-pages`` branch:\n\n```\n\u003e mike deploy [version]\n```\n\nYou can also update the ``latest`` alias if the branch you are deploying is the latest release:\n\n```\n\u003e mike deploy [version] latest --update-aliases\n```\n\nThese commands commit to the ``gh-pages`` on your local git repository. You can then push the ``gh-pages`` branch to the appropriate remote.\n\n## Development\n\nYou can set up a local developer build of the documentation by first preparing a python local environment:\n\n```bash\npip install -r ./requirements.txt\n```\n\nThen start the documentation in dev mode:\n\n```bash\nPYTHONPATH=./docs/mkdocs_extensions/ mkdocs serve\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Font-output-specifications","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnanoporetech%2Font-output-specifications","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Font-output-specifications/lists"}