{"id":25596873,"url":"https://github.com/nanoporetech/pod5-file-format","last_synced_at":"2025-05-15T20:07:30.917Z","repository":{"id":37491450,"uuid":"488631291","full_name":"nanoporetech/pod5-file-format","owner":"nanoporetech","description":"Pod5: a high performance file format for nanopore reads.","archived":false,"fork":false,"pushed_at":"2024-11-25T08:33:01.000Z","size":30142,"stargazers_count":148,"open_issues_count":36,"forks_count":20,"subscribers_count":25,"default_branch":"master","last_synced_at":"2025-05-09T13:06:19.967Z","etag":null,"topics":["apache-arrow","file-format","nanopore"],"latest_commit_sha":null,"homepage":"https://pod5-file-format.readthedocs.io/","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nanoporetech.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2022-05-04T14:54:03.000Z","updated_at":"2025-04-27T07:00:32.000Z","dependencies_parsed_at":"2023-11-14T20:27:53.966Z","dependency_job_id":"5660790a-5e10-404c-b435-dd697cdeba11","html_url":"https://github.com/nanoporetech/pod5-file-format","commit_stats":null,"previous_names":[],"tags_count":82,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpod5-file-format","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpod5-file-format/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpod5-file-format/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpod5-file-format/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nanoporetech","download_url":"https://codeload.github.com/nanoporetech/pod5-file-format/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254414499,"owners_count":22067272,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["apache-arrow","file-format","nanopore"],"created_at":"2025-02-21T12:34:59.907Z","updated_at":"2025-05-15T20:07:25.591Z","avatar_url":"https://github.com/nanoporetech.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Documentation Status](https://readthedocs.org/projects/pod5-file-format/badge/?version=latest)](https://pod5-file-format.readthedocs.io/)\n\nPOD5 File Format\n================\n\nPOD5 File Format\n================\n\nPOD5 is a file format for storing nanopore dna data in an easily accessible way.\nThe format is able to be written in a streaming manner which allows a sequencing\ninstrument to directly write the format.\n\nData in POD5 is stored using [Apache Arrow](https://github.com/apache/arrow), allowing\nusers to consume data in many languages using standard tools.\n\nWhat does this project contain\n------------------------------\n\nThis project contains a core library for reading and writing POD5 data, and a toolkit for\naccessing this data in other languages.\n\nDocumentation\n-------------\n\nFull documentation is found at https://pod5-file-format.readthedocs.io/\n\n\nUsage\n-----\n\nPOD5 is also bundled as a python module for easy use in scripts, a user can install using:\n\n```bash\n\u003e pip install pod5\n```\n\nThis python module provides the python library to write custom scripts against.\n\nPlease see [examples](./python/pod5/examples) for documentation on using the library.\n\nThe `pod5` package also provides [a selection of tools](./python/pod5/README.md).\n\n\nDesign\n------\n\nFor information about the design of POD5, see the [docs](./docs/README.md).\n\nDevelopment\n-----------\n\nIf you want to contribute to pod5_file_format, or our pre-built binaries do not meet your platform requirements, you can build pod5 from source using the instructions in [DEV.md](DEV.md)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Fpod5-file-format","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnanoporetech%2Fpod5-file-format","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Fpod5-file-format/lists"}