{"id":25596888,"url":"https://github.com/nanoporetech/pyspoa","last_synced_at":"2025-04-13T02:33:18.598Z","repository":{"id":63016230,"uuid":"242332710","full_name":"nanoporetech/pyspoa","owner":"nanoporetech","description":"Python bindings to spoa","archived":false,"fork":false,"pushed_at":"2023-10-04T08:52:14.000Z","size":47,"stargazers_count":20,"open_issues_count":4,"forks_count":3,"subscribers_count":20,"default_branch":"master","last_synced_at":"2025-04-06T08:02:15.590Z","etag":null,"topics":["alignment","multiple-sequence-alignment","nanopore","poa"],"latest_commit_sha":null,"homepage":"https://nanoporetech.com/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nanoporetech.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-02-22T11:50:11.000Z","updated_at":"2025-04-02T06:08:33.000Z","dependencies_parsed_at":"2024-06-20T23:26:33.834Z","dependency_job_id":"ef117267-4c15-4fc4-9bff-4f39785f0b69","html_url":"https://github.com/nanoporetech/pyspoa","commit_stats":null,"previous_names":[],"tags_count":13,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpyspoa","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpyspoa/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpyspoa/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanoporetech%2Fpyspoa/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nanoporetech","download_url":"https://codeload.github.com/nanoporetech/pyspoa/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248657819,"owners_count":21140842,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["alignment","multiple-sequence-alignment","nanopore","poa"],"created_at":"2025-02-21T12:35:11.576Z","updated_at":"2025-04-13T02:33:18.569Z","avatar_url":"https://github.com/nanoporetech.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# pyspoa\n\n![test-pyspoa](https://github.com/nanoporetech/pyspoa/workflows/test-pyspoa/badge.svg) [![PyPI version](https://badge.fury.io/py/pyspoa.svg)](https://badge.fury.io/py/pyspoa)\n\nPython bindings to [spoa](https://github.com/rvaser/spoa).\n\n## Installation\n\n```bash\n$ pip install pyspoa\n```\n\n## Usage\n\n```python\n\u003e\u003e\u003e from spoa import poa\n\u003e\u003e\u003e\n\u003e\u003e\u003e consensus, msa = poa(['AACTTATA', 'AACTTATG', 'AACTATA'])\n\u003e\u003e\u003e consensus\n'AACTTATA'\n\u003e\u003e\u003e msa\n['AACTTATA-', 'AACTTAT-G', 'AAC-TATA-']\n\u003e\u003e\u003e print(os.linesep.join(msa))\nAACTTATA-\nAACTTAT-G\nAAC-TATA-\n```\n\n## Developer Quick Start\n\n```bash\n$ git clone --recursive https://github.com/nanoporetech/pyspoa.git\n$ cd pyspoa\n$ python3 -m venv pyspoa\n$ source pyspoa/bin/activate\n(pyspoa) $ make build\n```\n\n### Licence and Copyright\n(c) 2019 Oxford Nanopore Technologies Ltd.\n\npyspoa is distributed under the terms of the MIT License.  If a copy of the License\nwas not distributed with this file, You can obtain one at https://github.com/nanoporetech/pyspoa\n\n### Research Release\n\nResearch releases are provided as technology demonstrators to provide early access to features or stimulate Community development of tools. Support for this software will be minimal and is only provided directly by the developers. Feature requests, improvements, and discussions are welcome and can be implemented by forking and pull requests. However much as we would like to rectify every issue and piece of feedback users may have, the developers may have limited resource for support of this software. Research releases may be unstable and subject to rapid iteration by Oxford Nanopore Technologies.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Fpyspoa","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnanoporetech%2Fpyspoa","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanoporetech%2Fpyspoa/lists"}