{"id":20693484,"url":"https://github.com/nanxstats/cwl-exploder","last_synced_at":"2026-06-05T05:31:18.521Z","repository":{"id":142658915,"uuid":"262476584","full_name":"nanxstats/cwl-exploder","owner":"nanxstats","description":"Shiny app to unpack monolithic CWL workflows","archived":false,"fork":false,"pushed_at":"2020-05-09T03:35:39.000Z","size":1121,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-05T22:11:50.807Z","etag":null,"topics":["bioinformatics","common-workflow-language","cwl","reticulate","shiny-apps"],"latest_commit_sha":null,"homepage":"https://nanx.app/cwl-exploder/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nanxstats.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-05-09T03:00:20.000Z","updated_at":"2020-05-09T03:35:42.000Z","dependencies_parsed_at":null,"dependency_job_id":"28b47be8-05af-4297-8619-8cbec9c78ff5","html_url":"https://github.com/nanxstats/cwl-exploder","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanxstats%2Fcwl-exploder","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanxstats%2Fcwl-exploder/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanxstats%2Fcwl-exploder/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nanxstats%2Fcwl-exploder/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nanxstats","download_url":"https://codeload.github.com/nanxstats/cwl-exploder/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":242956549,"owners_count":20212454,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","common-workflow-language","cwl","reticulate","shiny-apps"],"created_at":"2024-11-16T23:26:57.103Z","updated_at":"2025-12-16T05:02:25.746Z","avatar_url":"https://github.com/nanxstats.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# cwl-exploder\n\nA shiny app to unpack monolithic CWL workflows and split them into smaller components recursively using the Python package cwlformat.\n\n## Dependencies\n\nThis app uses [reticulate](https://rstudio.github.io/reticulate/) to call Python and the Python package [cwlformat](https://github.com/rabix/cwl-format). Follow its readme to install the Python package either using pip or from GitHub.\n\nAfter the Python package is installed, modify `.Rprofile` to give a hint to reticulate on where to find Python and the installed package. The default location is for a macOS Homebrew Python 3. Relaunch the RStudio session to use this profile.\n\nIf you encountered an error on unable to import the Python module, please consult the articles [Python Version Configuration](https://rstudio.github.io/reticulate/articles/versions.html) and [Installing Python Packages](https://rstudio.github.io/reticulate/articles/python_packages.html), then add a few lines to `server/wrapper.R` before `reticulate::import` to help reticulate locate the Python package. For example, if we use virtualenv:\n\n```r\nuse_python(\"/your/path/to/bin/python3\")\n\nvirtualenv_create(\"venv\", python = \"/your/path/to/bin/python3\")\nvirtualenv_install(\"venv\", packages = c(\"cwlformat\"), ignore_installed = FALSE)\nuse_virtualenv(\"venv\", required = TRUE)\n```\n\n## Related apps\n\n- [cwl-formatter](https://github.com/nanxstats/cwl-formatter) - Shiny app to format Common Workflow Language apps.\n- [cwl-upgrader](https://github.com/nanxstats/cwl-upgrader) - Shiny app to upgrade Common Workflow Language apps from sbg:draft2 to v1.0.\n\n## Copyright\n\n© 2020 Seven Bridges Genomics, Inc. All rights reserved.\n\nThis project is licensed under the [GNU Affero General Public License v3](LICENSE).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanxstats%2Fcwl-exploder","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnanxstats%2Fcwl-exploder","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnanxstats%2Fcwl-exploder/lists"}