{"id":33118331,"url":"https://github.com/nasqar/SeuratWizard","last_synced_at":"2025-11-19T21:01:16.533Z","repository":{"id":154285677,"uuid":"154484830","full_name":"nasqar/SeuratWizard","owner":"nasqar","description":"This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.","archived":false,"fork":false,"pushed_at":"2019-09-24T06:52:11.000Z","size":9199,"stargazers_count":13,"open_issues_count":1,"forks_count":5,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-05-09T18:53:24.341Z","etag":null,"topics":["r","seurat","shiny","shiny-apps","single-cell","single-cell-analysis","single-cell-genomics","single-cell-rna-seq","webapplication"],"latest_commit_sha":null,"homepage":"http://nasqar.abudhabi.nyu.edu","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nasqar.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2018-10-24T10:49:06.000Z","updated_at":"2022-03-14T15:40:23.000Z","dependencies_parsed_at":null,"dependency_job_id":"46edfce3-73d8-4828-8e76-5582a5b4680b","html_url":"https://github.com/nasqar/SeuratWizard","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/nasqar/SeuratWizard","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nasqar%2FSeuratWizard","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nasqar%2FSeuratWizard/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nasqar%2FSeuratWizard/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nasqar%2FSeuratWizard/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nasqar","download_url":"https://codeload.github.com/nasqar/SeuratWizard/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nasqar%2FSeuratWizard/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":285327645,"owners_count":27152947,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-11-19T02:00:05.673Z","response_time":65,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["r","seurat","shiny","shiny-apps","single-cell","single-cell-analysis","single-cell-genomics","single-cell-rna-seq","webapplication"],"created_at":"2025-11-15T03:00:32.974Z","updated_at":"2025-11-19T21:01:16.497Z","avatar_url":"https://github.com/nasqar.png","language":"R","readme":"\n\n![#1589F0](https://placehold.it/15/1589F0/000000?text=+) `This version is no longer supported. See ` \u003ca href=\"https://github.com/nasqar/seuratv3wizard\"\u003eSeuratV3Wizard\u003c/a\u003e `for the new version`\n\n# SeuratWizard: R Shiny interface for Seurat single-cell analysis library\n\n## Online/Demo:\nYou can try it online at http://nasqar.abudhabi.nyu.edu/SeuratWizard\n\n## Run using docker (Recommended):\n\n```\ndocker run -p 80:80 aymanm/seuratwizard\n```\nThis will run on port 80\n***\n\n## Local Install:\n\n```\ndevtools::install_github(\"nasqar/SeuratWizard\")\n```\n\n## Run:\n\n```\nlibrary(SeuratWizard)\nSeuratWizard()\n```\nThis will run on http://0.0.0.0:1234/ by default\n\nTo run on specific ip/port:\n\n```\nip = '127.0.0.1'\nportNumber = 5555\nSeuratWizard(ip,portNumber)\n```\nThis will run on http://127.0.0.1:5555/\n\n## Screenshots:\n![alt text](screenshots/screenshot-input.png \"Input Data\")\n\n![alt text](screenshots/screenshot-vln.png \"Vln Plots\")\n\n![alt text](screenshots/screenshot-biomarkers.png \"Cluster Biomarkers\")\n\n## Acknowledgements:\n\n1) Rahul Satija, Andrew Butler and Paul Hoffman (2017). Seurat: Tools for Single Cell Genomics. R package version 2.2.1\\. [https://CRAN.R-project.org/package=Seurat](https://CRAN.R-project.org/package=Seurat)\n\n2) [Satija Lab](http://satijalab.org/seurat/)\n","funding_links":[],"categories":["Software list"],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnasqar%2FSeuratWizard","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnasqar%2FSeuratWizard","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnasqar%2FSeuratWizard/lists"}