{"id":19740264,"url":"https://github.com/nceas/fairdataone","last_synced_at":"2026-01-28T20:40:57.993Z","repository":{"id":71253813,"uuid":"330096800","full_name":"NCEAS/fairdataone","owner":"NCEAS","description":"DataONE FAIR manuscript","archived":false,"fork":false,"pushed_at":"2021-04-15T23:23:50.000Z","size":789,"stargazers_count":1,"open_issues_count":11,"forks_count":0,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-06-09T14:49:35.023Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NCEAS.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"authorship_guidelines.md","dei":null,"publiccode":null,"codemeta":null}},"created_at":"2021-01-16T06:06:58.000Z","updated_at":"2021-04-15T23:23:53.000Z","dependencies_parsed_at":"2023-05-19T00:00:22.833Z","dependency_job_id":null,"html_url":"https://github.com/NCEAS/fairdataone","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/NCEAS/fairdataone","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCEAS%2Ffairdataone","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCEAS%2Ffairdataone/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCEAS%2Ffairdataone/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCEAS%2Ffairdataone/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NCEAS","download_url":"https://codeload.github.com/NCEAS/fairdataone/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCEAS%2Ffairdataone/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28851118,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-28T15:15:36.453Z","status":"ssl_error","status_checked_at":"2026-01-28T15:15:13.020Z","response_time":57,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-12T01:20:16.686Z","updated_at":"2026-01-28T20:40:57.979Z","avatar_url":"https://github.com/NCEAS.png","language":"TeX","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: github_document\narticle_title: \"A quantitiative assessment of metadata practices in the global DataONE repository network\"\nauthors: [\"S. Jeanette Clark\", \"Chris Beltz\", \"Peter Slaughter\", \"Ted Habermmann\", \"Matthew B. Jones\"]\npub_date: 2021\n---\n\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\",\n  fig.path = \"README-\"\n)\n# Please put your title here to include it in the file below.\ntitle \u003c- rmarkdown::metadata$article_title\nauthors \u003c- rmarkdown::metadata$authors\npub_date \u003c- rmarkdown::metadata$pub_date\n```\n\n# fairdataone\n\n*Status*: Incomplete Work in Progress (WIP)\n\nThis repository contains the data and code for our paper:\n\n\u003e `r authors`, (`r pub_date`). _`r title`_. Name of journal/book \u003chttps://doi.org/xxx/xxx\u003e\n\nOur pre-print is online here:\n\n\u003e `r authors`, (`r pub_date`). _`r title`_. Name of journal/book, Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/xxx/xxx\u003e\n\n\n### How to cite\n\nPlease cite this compendium as:\n\n\u003e `r authors`, (`r format(Sys.Date(), \"%Y\")`). _Compendium of R code and data for `r title`_. Accessed `r format(Sys.Date(), \"%d %b %Y\")`. Online at \u003chttps://doi.org/xxx/xxx\u003e\n\n## Contents\n\n- [:file\\_folder: manuscript](/manuscript): R Markdown source document\n  for manuscript. Includes code to reproduce the figures and tables\n  generated by the analysis. It also has a rendered version,\n  `manuscript.pdf`, suitable for reading (the code is replaced by figures\n  and tables in this file)\n- [:file\\_folder: data](/manuscript/data): Data used in the analysis. Most\n  data are retrieved from a data archive, but small static data files may also\n  be retrieved from this directory.\n- [:file\\_folder: figures](/manuscript/figures): Plots and other illustrations.\n\n## How to run run locally\n\nThis research compendium has been developed using the statistical programming\nlanguage R. To work with the compendium, you will need\ninstalled on your computer the [R software](https://cloud.r-project.org/)\nitself and optionally [RStudio Desktop](https://rstudio.com/products/rstudio/download/).\n\nAfter downloading the compendium from GitHub:\n\n- open the `.Rproj` file in RStudio\n- run `devtools::install()` to ensure you have the packages this analysis \n  depends on (also listed in the [DESCRIPTION](/DESCRIPTION) file). This also \n  installs the `fairdataone` package, which is necessary to Knit the manuscript.\n- finally, open `manuscript/manuscript.Rmd` and knit to produce the `manuscript.pdf`, \n  or run `rmarkdown::render(\"manuscript/manuscript.Rmd\")` in the R console.\n\n### Licenses\n\n**Text and figures :**  [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)\n\n**Code :** See the [DESCRIPTION](DESCRIPTION) file\n\n**Data :** [CC-0](http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnceas%2Ffairdataone","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnceas%2Ffairdataone","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnceas%2Ffairdataone/lists"}