{"id":23768560,"url":"https://github.com/nci-gdc/vep-tool","last_synced_at":"2026-04-18T12:03:39.165Z","repository":{"id":47235585,"uuid":"55158510","full_name":"NCI-GDC/vep-tool","owner":"NCI-GDC","description":"GDC VEP Plugins","archived":false,"fork":false,"pushed_at":"2025-03-10T21:33:15.000Z","size":60,"stargazers_count":0,"open_issues_count":2,"forks_count":1,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-10-06T19:47:07.718Z","etag":null,"topics":["bioinformatics","docker","workflow-tool"],"latest_commit_sha":null,"homepage":"","language":"Perl","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NCI-GDC.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":"NOTICE","maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2016-03-31T14:49:17.000Z","updated_at":"2023-05-23T01:59:38.000Z","dependencies_parsed_at":"2022-09-17T06:42:54.870Z","dependency_job_id":null,"html_url":"https://github.com/NCI-GDC/vep-tool","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/NCI-GDC/vep-tool","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCI-GDC%2Fvep-tool","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCI-GDC%2Fvep-tool/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCI-GDC%2Fvep-tool/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCI-GDC%2Fvep-tool/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NCI-GDC","download_url":"https://codeload.github.com/NCI-GDC/vep-tool/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NCI-GDC%2Fvep-tool/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31967993,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-18T00:39:45.007Z","status":"online","status_checked_at":"2026-04-18T02:00:07.018Z","response_time":103,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","docker","workflow-tool"],"created_at":"2025-01-01T01:37:35.074Z","updated_at":"2026-04-18T12:03:39.150Z","avatar_url":"https://github.com/NCI-GDC.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"Further documentation available [here](https://docs.google.com/document/d/17NFwGvn4vMEXZV9Qmg30BqAcKrdxBYCOB4pFdkkwIIo/edit#)\n\n# Using this template\n\nThis template repository should be used as the base for new Dockerized softare repositories.\n\n# Software Dockers of multiple versions\n\n## Pre-requisites\n\n- Docker\n- [just](https://github.com/casey/just)\n\n`just init` will install the correct version of `pre-commit`, be sure to have a python3.8+ virtual environment active.\n\n- `just build \u003cVERSION\u003e` will create the Docker for the specified VERSION\n\n`just build-all` will build all available Docker images.\n\n## Just\n\nThe `just` utility is a command runner replacement for `make`.\n\nIt has various improvements over `make` including the ability to list available command with `just -l`:\n\n### Root Justfile\n\n```\nAvailable recipes:\n    build VERSION # Builds individual workflow\n    build-all      # Builds all docker images for each directory with a justfile\n    init\n```\n\nThe root `justfile` provides recipes for Dockerizing workflows locally, while workflow-level `justfiles` provide recipes for building the workflow.\n\n### Workflow Justfile\n\nThe version-level `justfile` requires the `DOCKERFILE` path be updated.\n\n```\n# justfile\nDOCKERFILE := \"../Dockerfile.multi\"\n```\n\nMany kinds of software are able to share a single Dockerfile with a parameterized version.\n\nHowever, if a particular version needs a bespoke Dockerfile, simply create on in the version directory and upate the justfile:\n\n```\n# justfile\nDOCKERFILE := \"./Dockerfile\"\n```\n\n```\nAvailable recipes:\n    emit-dockerfile          # Prints which Dockerfile to use for CI builds\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnci-gdc%2Fvep-tool","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnci-gdc%2Fvep-tool","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnci-gdc%2Fvep-tool/lists"}