{"id":19448664,"url":"https://github.com/neurodata/maggot_connectome","last_synced_at":"2026-05-12T12:05:17.287Z","repository":{"id":53472442,"uuid":"331123332","full_name":"neurodata/maggot_connectome","owner":"neurodata","description":"Paper on modeling the larval Drosophila connectome","archived":false,"fork":false,"pushed_at":"2022-03-18T19:18:34.000Z","size":110037,"stargazers_count":1,"open_issues_count":11,"forks_count":1,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-02-25T08:54:14.893Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://docs.neurodata.io/maggot_connectome/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/neurodata.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2021-01-19T22:10:51.000Z","updated_at":"2022-03-18T19:18:37.000Z","dependencies_parsed_at":"2022-09-09T21:40:53.837Z","dependency_job_id":null,"html_url":"https://github.com/neurodata/maggot_connectome","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/neurodata/maggot_connectome","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurodata%2Fmaggot_connectome","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurodata%2Fmaggot_connectome/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurodata%2Fmaggot_connectome/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurodata%2Fmaggot_connectome/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurodata","download_url":"https://codeload.github.com/neurodata/maggot_connectome/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurodata%2Fmaggot_connectome/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32938021,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-12T09:19:52.626Z","status":"ssl_error","status_checked_at":"2026-05-12T09:17:33.438Z","response_time":102,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-10T16:28:02.189Z","updated_at":"2026-05-12T12:05:17.272Z","avatar_url":"https://github.com/neurodata.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Maggot connectome\n\nA paper exploring the connectome of a larval Drosophila\n\n## Repo structure \n- ``.github``: Files specifying how the repo behaves on GitHub\n- ``data``: Directory to store the raw data. \n- ``docs``: Files to build the documentation website in the form of a [Jupyter Book](https://jupyterbook.org/intro.html)\n- ``pkg``: A local Python package used for analysis in the Jupyter Notebooks\n\n## Building the book \n*Coming soon*\n\n## Running the code\n*Coming soon*\n\n\u003c!-- ## Usage\n\n### Building the book\n\nIf you'd like to develop on and build the Maggot connectome book, you should:\n\n- Clone this repository and run\n- Run `pip install -r requirements.txt` (it is recommended you do this within a virtual environment)\n- (Recommended) Remove the existing `Maggot connectome/_build/` directory\n- Run `jupyter-book build Maggot connectome/`\n\nA fully-rendered HTML version of the book will be built in `Maggot connectome/_build/html/`.\n\n### Hosting the book\n\nThe html version of the book is hosted on the `gh-pages` branch of this repo. A GitHub actions workflow has been created that automatically builds and pushes the book to this branch on a push or pull request to main.\n\nIf you wish to disable this automation, you may remove the GitHub actions workflow and build the book manually by:\n\n- Navigating to your local build; and running,\n- `ghp-import -n -p -f Maggot connectome/_build/html`\n\nThis will automatically push your build to the `gh-pages` branch. More information on this hosting process can be found [here](https://jupyterbook.org/publish/gh-pages.html#manually-host-your-book-with-github-pages).\n\n--\u003e\n\n## Credits\n\nThis project is created using the excellent open source [Jupyter Book project](https://jupyterbook.org/) and the [executablebooks/cookiecutter-jupyter-book template](https://github.com/executablebooks/cookiecutter-jupyter-book).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurodata%2Fmaggot_connectome","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fneurodata%2Fmaggot_connectome","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurodata%2Fmaggot_connectome/lists"}