{"id":23085787,"url":"https://github.com/neurodatawithoutborders/ccf-widget","last_synced_at":"2025-10-20T03:34:32.044Z","repository":{"id":57417004,"uuid":"271863803","full_name":"NeurodataWithoutBorders/ccf-widget","owner":"NeurodataWithoutBorders","description":null,"archived":false,"fork":false,"pushed_at":"2022-11-21T17:47:51.000Z","size":1910,"stargazers_count":5,"open_issues_count":11,"forks_count":3,"subscribers_count":12,"default_branch":"master","last_synced_at":"2024-11-18T15:11:34.446Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NeurodataWithoutBorders.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-06-12T18:20:43.000Z","updated_at":"2023-08-19T17:14:55.000Z","dependencies_parsed_at":"2023-01-23T15:46:18.754Z","dependency_job_id":null,"html_url":"https://github.com/NeurodataWithoutBorders/ccf-widget","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NeurodataWithoutBorders%2Fccf-widget","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NeurodataWithoutBorders%2Fccf-widget/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NeurodataWithoutBorders%2Fccf-widget/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NeurodataWithoutBorders%2Fccf-widget/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NeurodataWithoutBorders","download_url":"https://codeload.github.com/NeurodataWithoutBorders/ccf-widget/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":230005219,"owners_count":18158367,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-16T18:10:55.100Z","updated_at":"2025-10-20T03:34:27.021Z","avatar_url":"https://github.com/NeurodataWithoutBorders.png","language":"Python","readme":"# ccf-widget\n\nJupyter [ipywidget](https://ipywidgets.readthedocs.io/en/stable/) to\ninteractively explore the [Allen Mouse Brain Common Coordinate Framework\nv3](https://doi.org/10.1016/j.cell.2020.04.007), plot dynamic markers, or cell\nrepresentations.  Couple with the\n[nwb-jupyter-widgets](https://github.com/NeurodataWithoutBorders/nwb-jupyter-widgets)\nfor an understanding of electrophysiology.\n\n[![Binder](http://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/NeurodataWithoutBorders/ccf-widget/master?filepath=examples%2FStructureTreeNavigation.ipynb)\n\n![ccfwidget](https://i.imgur.com/TV6Ebym.gif)\n\n## Installation\n\n```shell\npip install ccfwidget\n```\n\n## Usage\n\nIn Jupyter:\n\n```python\nfrom ccfwidget import CCFWidget\nccf = CCFWidget()\nccf\n```\n\nExamples on Binder:\n\n- [Explore the structure tree](https://mybinder.org/v2/gh/NeurodataWithoutBorders/ccf-widget/master?filepath=examples%2FStructureTreeNavigation.ipynb)\n- [Use markers to represent neuropixels](https://mybinder.org/v2/gh/NeurodataWithoutBorders/ccf-widget/master?filepath=examples%2FNeuropixelProbes.ipynb)\n\nAdditional examples:\n\n- [Add a cell type morphology](./examples/CellTypes.ipynb)\n\n## Troubleshooting\n\nWith the error:\n\n```\n[...]\nIOPub message rate exceeded.\n[...]\n```\n\nStart `jupyter` with the flag:\n\n```\njupyter notebook --NotebookApp.iopub_msg_rate_limit=1e12\n```\n\n## Hacking\n\nContributions are welcome and appreciated.\n\nTo install an editable build:\n\n```\npython3 -m pip install flit\nflit install --symlink\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurodatawithoutborders%2Fccf-widget","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fneurodatawithoutborders%2Fccf-widget","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurodatawithoutborders%2Fccf-widget/lists"}