{"id":25138611,"url":"https://github.com/neurogenomics/rarediseaseprioritisation","last_synced_at":"2026-01-12T13:58:46.750Z","repository":{"id":69000588,"uuid":"501244230","full_name":"neurogenomics/RareDiseasePrioritisation","owner":"neurogenomics","description":"Prioritise cell-type-specific gene targets from the Rare Disease Celltyping project.","archived":false,"fork":false,"pushed_at":"2024-03-21T10:49:05.000Z","size":81670,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-02-08T17:16:59.463Z","etag":null,"topics":["aav","celltypes","clinical-research","genomics","rare-disease","scrna-seq","single-cell-genomics"],"latest_commit_sha":null,"homepage":"","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/neurogenomics.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2022-06-08T12:37:20.000Z","updated_at":"2025-01-23T23:52:54.000Z","dependencies_parsed_at":"2023-03-01T07:45:43.607Z","dependency_job_id":"149e7da8-310a-4922-a44a-7496dfb878a6","html_url":"https://github.com/neurogenomics/RareDiseasePrioritisation","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2FRareDiseasePrioritisation","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2FRareDiseasePrioritisation/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2FRareDiseasePrioritisation/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/neurogenomics%2FRareDiseasePrioritisation/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/neurogenomics","download_url":"https://codeload.github.com/neurogenomics/RareDiseasePrioritisation/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246927840,"owners_count":20856198,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aav","celltypes","clinical-research","genomics","rare-disease","scrna-seq","single-cell-genomics"],"created_at":"2025-02-08T17:17:14.581Z","updated_at":"2026-01-12T13:58:46.723Z","avatar_url":"https://github.com/neurogenomics.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\ntitle: \"README\"\nauthor: \"\u003ch4\u003eAuthors:\u003c/h4\u003e Momoko Otani, Brian M. Schilder, Nathan G. Skene\"\ndate: \"\u003ch4\u003eREADME updated: \u003ci\u003e`r format( Sys.Date(), '%b-%d-%Y')`\u003c/i\u003e\u003c/h4\u003e\"\noutput:\n  github_document\n---\n\n# About\n\nPrioritise cell-type-specific gene targets from\nthe [Rare Disease Celltyping](https://neurogenomics.github.io/rare_disease_celltyping_apps/home/)\nproject.\n\nThesis project by Momoko Otani, supervised by Nathan Skene and Brian Schilder.\n\n# Rmarkdown reports\n\n## [Prioritise targets](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/prioritise_targets)\n### [Reduced network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/top_targets_network.html)\n### [Extended network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/all_targets_network.html)\n\n## [HPO annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/HPO_annotations)\n## [Neurodegeneration](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/neurodegeneration)\n### [dementia/neurodegeneration vs. diabetes/obesity network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/dementia_diabetes_network.html)\n## [Cardiovascular](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/cardiovascular.html)\n### [Default network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_network.html)\n### [Hierarchical network](https://neurogenomics.github.io/RareDiseasePrioritisation/networks/cardiovascular_hierarchical_network.html)\n\n## [Symptoms](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/symptoms)\n## [Differential outcomes](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/differential_outcomes)\n## [GPT annotations](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/gpt_annotations)\n## [Orphanet prevalence data](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/orphanet_prevalence)\n## [CSL Areas of Interest](https://neurogenomics.github.io/RareDiseasePrioritisation/reports/CSL)\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurogenomics%2Frarediseaseprioritisation","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fneurogenomics%2Frarediseaseprioritisation","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fneurogenomics%2Frarediseaseprioritisation/lists"}