{"id":13510005,"url":"https://github.com/nextflow-io/nextflow","last_synced_at":"2025-05-13T16:10:43.299Z","repository":{"id":7688591,"uuid":"9052236","full_name":"nextflow-io/nextflow","owner":"nextflow-io","description":"A DSL for data-driven computational pipelines","archived":false,"fork":false,"pushed_at":"2025-04-23T20:39:31.000Z","size":60905,"stargazers_count":2910,"open_issues_count":547,"forks_count":681,"subscribers_count":89,"default_branch":"master","last_synced_at":"2025-04-23T20:55:35.469Z","etag":null,"topics":["aws","bioinformatics","cloud","dataflow","docker","groovy","hello","hpc","nextflow","pipeline","pipeline-framework","reproducible-research","reproducible-science","sge","singularity","singularity-containers","slurm","workflow-engine"],"latest_commit_sha":null,"homepage":"http://nextflow.io","language":"Groovy","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nextflow-io.png","metadata":{"files":{"readme":"README.md","changelog":"changelog.txt","contributing":"CONTRIBUTING.md","funding":null,"license":"COPYING","code_of_conduct":"CODE-OF-CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":".github/CODEOWNERS","security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2013-03-27T11:17:33.000Z","updated_at":"2025-04-23T20:39:36.000Z","dependencies_parsed_at":"2023-09-22T05:27:21.989Z","dependency_job_id":"99c97c87-dc9d-4092-b872-684add29f6c2","html_url":"https://github.com/nextflow-io/nextflow","commit_stats":{"total_commits":6282,"total_committers":183,"mean_commits":34.32786885245902,"dds":0.1263928685132123,"last_synced_commit":"4c54db6ac634cc80a820752d8f4edb959fc832e4"},"previous_names":[],"tags_count":316,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextflow-io%2Fnextflow","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextflow-io%2Fnextflow/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextflow-io%2Fnextflow/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextflow-io%2Fnextflow/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nextflow-io","download_url":"https://codeload.github.com/nextflow-io/nextflow/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":250514767,"owners_count":21443208,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aws","bioinformatics","cloud","dataflow","docker","groovy","hello","hpc","nextflow","pipeline","pipeline-framework","reproducible-research","reproducible-science","sge","singularity","singularity-containers","slurm","workflow-engine"],"created_at":"2024-08-01T02:01:20.881Z","updated_at":"2025-04-23T20:56:31.021Z","avatar_url":"https://github.com/nextflow-io.png","language":"Groovy","readme":"\u003cpicture\u003e\n  \u003csource media=\"(prefers-color-scheme: dark)\" srcset=\"docs/_static/nextflow-logo-bg-dark.png\"\u003e\n  \u003csource media=\"(prefers-color-scheme: light)\" srcset=\"docs/_static/nextflow-logo-bg-light.png\"\u003e\n  \u003cimg alt=\"Nextflow Logo\" src=\"docs/_static/nextflow-logo-bg-light.png\"\u003e\n\u003c/picture\u003e\n\n*\"Dataflow variables are spectacularly expressive in concurrent programming\"*\n\u003cbr\u003e[Henri E. Bal , Jennifer G. Steiner , Andrew S. Tanenbaum](https://dl.acm.org/doi/abs/10.1145/72551.72552)\n\n[![Nextflow CI](https://github.com/nextflow-io/nextflow/workflows/Nextflow%20CI/badge.svg)](https://github.com/nextflow-io/nextflow/actions/workflows/build.yml?query=branch%3Amaster+event%3Apush)\n[![Nextflow version](https://img.shields.io/github/release/nextflow-io/nextflow.svg?colorB=58bd9f\u0026style=popout)](https://github.com/nextflow-io/nextflow/releases/latest)\n[![Nextflow Twitter](https://img.shields.io/twitter/url/https/nextflowio.svg?colorB=58bd9f\u0026\u0026label=%40nextflow\u0026style=popout)](https://twitter.com/nextflowio)\n[![Nextflow Publication](https://img.shields.io/badge/Published-Nature%20Biotechnology-26af64.svg?colorB=58bd9f\u0026style=popout)](https://www.nature.com/articles/nbt.3820)\n[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?colorB=58bd9f\u0026style=popout)](http://bioconda.github.io/recipes/nextflow/README.html)\n[![Nextflow license](https://img.shields.io/github/license/nextflow-io/nextflow.svg?colorB=58bd9f\u0026style=popout)](https://github.com/nextflow-io/nextflow/blob/master/COPYING)\n\nNextflow is a workflow system for creating scalable, portable, and reproducible workflows. It is based on the dataflow programming model, which greatly simplifies the writing of parallel and distributed pipelines, allowing you to focus on the flow of data and computation. Nextflow can deploy workflows on a variety of execution platforms, including your local machine, HPC schedulers, AWS Batch, Azure Batch, Google Cloud Batch, and Kubernetes. Additionally, it supports many ways to manage your software dependencies, including Conda, Spack, Docker, Podman, Singularity, and more.\n\n## Quick start\n\nInstall Nextflow with a single command:\n\n```bash\ncurl -fsSL https://get.nextflow.io | bash\n```\n\nIt creates the `nextflow` executable file in the current directory. You can then move it to a directory in your `$PATH` to run it from anywhere.\n\nNextflow can also be installed from Bioconda:\n\n```bash\nconda install -c bioconda nextflow\n```\n\n## Documentation\n\nThe Nextflow documentation is available for the latest [stable](https://nextflow.io/docs/latest/) and [edge](https://nextflow.io/docs/edge/) releases.\n\n## Community\n\nYou can post questions and get help in the [Nextflow community forum](https://community.seqera.io) or the [Nextflow Slack](https://www.nextflow.io/slack-invite.html). Bugs and feature requests should be reported as [GitHub issues](https://github.com/nextflow-io/nextflow/issues/new/choose).\n\nThe Nextflow community is highly active with regular community meetings, events, a podcast and more. You can view much of this material on the [Nextflow](https://www.youtube.com/@Nextflow) and [nf-core](https://www.youtube.com/@nf-core) YouTube channels.\n\nThe [nf-core](https://nf-co.re/) project is a community effort aggregating high quality Nextflow workflows which can be used by everyone.\n\n## Contributing\n\nContributions are more than welcome. See the [CONTRIBUTING](CONTRIBUTING.md) file for details.\n\n## License\n\nNextflow is released under the Apache 2.0 license. Nextflow is a [registered trademark](https://github.com/nextflow-io/trademark).\n\n## Citations\n\nIf you use Nextflow in your work, please cite:\n\nP. Di Tommaso, et al. Nextflow enables reproducible computational workflows. Nature Biotechnology 35, 316–319 (2017) doi:[10.1038/nbt.3820](http://www.nature.com/nbt/journal/v35/n4/full/nbt.3820.html)\n\n## Credits\n\nNextflow is built on two \\*great* open-source software projects, \u003ca href='http://groovy-lang.org' target='_blank'\u003eGroovy\u003c/a\u003e\nand \u003ca href='http://www.gpars.org/' target='_blank'\u003eGPars\u003c/a\u003e.\n\n\u003ca href='http://www.yourkit.com' target='_blank'\u003eYourKit\u003c/a\u003e is kindly supporting Nextflow with its fully-featured Java Profiler.\n","funding_links":[],"categories":["Groovy","Next Generation Sequencing","[Groovy](#groovy)","其他_机器学习与深度学习","docker","bioinformatics","workflow-engine","Tools","🏗️ Infrastructure"],"sub_categories":["Workflow Managers","Mesh networks","Extensions"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextflow-io%2Fnextflow","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnextflow-io%2Fnextflow","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextflow-io%2Fnextflow/lists"}