{"id":23223097,"url":"https://github.com/nextstrain/lassa","last_synced_at":"2025-08-19T11:32:58.534Z","repository":{"id":40382042,"uuid":"141668238","full_name":"nextstrain/lassa","owner":"nextstrain","description":"Nextstrain build for Lassa virus","archived":false,"fork":false,"pushed_at":"2024-11-28T16:41:27.000Z","size":310,"stargazers_count":0,"open_issues_count":9,"forks_count":5,"subscribers_count":18,"default_branch":"main","last_synced_at":"2024-11-28T17:23:59.585Z","etag":null,"topics":["nextstrain","pathogen"],"latest_commit_sha":null,"homepage":"https://nextstrain.org/staging/lassa","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nextstrain.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-07-20T05:39:42.000Z","updated_at":"2024-11-28T16:12:45.000Z","dependencies_parsed_at":"2022-08-09T18:51:37.663Z","dependency_job_id":"7b186118-cdfa-4617-9ee5-99ae08bd92f5","html_url":"https://github.com/nextstrain/lassa","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Flassa","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Flassa/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Flassa/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Flassa/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nextstrain","download_url":"https://codeload.github.com/nextstrain/lassa/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":230351132,"owners_count":18212790,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["nextstrain","pathogen"],"created_at":"2024-12-18T23:16:02.975Z","updated_at":"2024-12-18T23:16:03.504Z","avatar_url":"https://github.com/nextstrain.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# nextstrain.org/lassa\n\nThis repository contains two workflows for the analysis of Lassa virus data:\n\n- [`ingest/`](./ingest) - Download data from GenBank, clean and curate it, separate into L and S segments, and upload it to S3\n- [`phylogenetic/`](./phylogenetic) - Filter sequences, align, construct phylogeny and export for visualization\n\nEach folder contains a README.md with more information.\n\n## Installation\n\nFollow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools.\n\n## Quickstart\n\nRun the default phylogenetic workflow via:\n```\ncd phylogenetic/\nnextstrain build .\nnextstrain view .\n```\n\n## Documentation\n\n- [Running a pathogen workflow](https://docs.nextstrain.org/en/latest/tutorials/running-a-workflow.html)\n- [Contributor documentation](./CONTRIBUTING.md)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Flassa","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnextstrain%2Flassa","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Flassa/lists"}