{"id":13875915,"url":"https://github.com/nextstrain/nextclade","last_synced_at":"2026-04-15T08:01:09.733Z","repository":{"id":36960034,"uuid":"271799467","full_name":"nextstrain/nextclade","owner":"nextstrain","description":"Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement","archived":false,"fork":false,"pushed_at":"2025-05-13T17:59:23.000Z","size":62095,"stargazers_count":230,"open_issues_count":134,"forks_count":61,"subscribers_count":19,"default_branch":"master","last_synced_at":"2025-05-13T18:47:54.332Z","etag":null,"topics":["clade","clades","coronavirus","covid","covid-19","covid19","dna","influenza","ncov","neherlab","next-generation-sequencing","nextstrain","research","rna","sars-cov-2","science","sequences","sequencing","strain","virus"],"latest_commit_sha":null,"homepage":"https://clades.nextstrain.org","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nextstrain.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-06-12T13:01:14.000Z","updated_at":"2025-05-13T00:21:56.000Z","dependencies_parsed_at":"2024-06-18T06:25:26.346Z","dependency_job_id":"ac0ee641-bd20-4c7f-978f-6152807bd8bd","html_url":"https://github.com/nextstrain/nextclade","commit_stats":{"total_commits":5069,"total_committers":28,"mean_commits":"181.03571428571428","dds":"0.16531860327480763","last_synced_commit":"11bb4ec8d2dc6ba1fe375465e3f56c5187d6022e"},"previous_names":[],"tags_count":251,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Fnextclade","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Fnextclade/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Fnextclade/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Fnextclade/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nextstrain","download_url":"https://codeload.github.com/nextstrain/nextclade/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254057664,"owners_count":22007544,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["clade","clades","coronavirus","covid","covid-19","covid19","dna","influenza","ncov","neherlab","next-generation-sequencing","nextstrain","research","rna","sars-cov-2","science","sequences","sequencing","strain","virus"],"created_at":"2024-08-06T06:00:49.655Z","updated_at":"2026-04-15T08:01:04.706Z","avatar_url":"https://github.com/nextstrain.png","language":"Rust","readme":"\u003ch1 id=\"nextclade\" align=\"center\"\u003e\nNextclade\n\u003c/h1\u003e\n\n\u003ch4 id=\"nextclade\" align=\"center\"\u003e\nViral genome clade assignment, mutation calling, and sequence quality checks\n\u003c/h4\u003e\n\n\u003cp align=\"center\"\u003e\nby Nextstrain team\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n  \u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"https://clades.nextstrain.org\"\u003e\n    🌎 clades.nextstrain.org\n  \u003c/a\u003e\n\u003c/p\u003e\n\n| \u003cvideo controls autoplay loop muted src=\"https://github.com/nextstrain/nextclade/assets/9403403/9bf0bab5-b7ee-4161-96a6-23e76ddb56b4\" width=\"680\"\u003e\u003c/video\u003e                             |\n|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|\n| Brief demonstration of Nextclade Web. Large version is \u003ca target=\"_blank\" href=\"https://github.com/nextstrain/nextclade/assets/9403403/9bf0bab5-b7ee-4161-96a6-23e76ddb56b4\"\u003ehere\u003c/a\u003e. |\n\n\u003cp align=\"center\"\u003e\n  \u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"LICENSE\"\u003e\n    \u003cimg src=\"https://img.shields.io/github/license/nextstrain/nextclade\" alt=\"License\" /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://clades.nextstrain.org/\"\u003e\n    \u003cimg src=\"https://img.shields.io/website?url=https%3A%2F%2Fclades.nextstrain.org\u0026logo=circle\u0026logoColor=white\u0026label=clades.nextstrain.org\" /\u003e\n  \u003c/a\u003e\n  \u003ca href=\"https://nextstrain:nextstrain@staging.clades.nextstrain.org/\"\u003e\n    \u003cimg src=\"https://img.shields.io/website?url=https%3A%2F%2Fnextstrain%3Anextstrain%40staging.clades.nextstrain.org\u0026logo=circle\u0026logoColor=white\u0026label=staging.clades.nextstrain.org\" /\u003e\n  \u003c/a\u003e\n  \u003ca href=\"https://nextstrain:nextstrain@master.clades.nextstrain.org/\"\u003e\n    \u003cimg src=\"https://img.shields.io/website?url=https%3A%2F%2Fnextstrain%3Anextstrain%40master.clades.nextstrain.org\u0026logo=circle\u0026logoColor=white\u0026label=master.clades.nextstrain.org\" /\u003e\n  \u003c/a\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n  \u003ca href=\"https://app.circleci.com/pipelines/github/nextstrain/nextclade?branch=master\"\u003e\n    \u003cimg src=\"https://img.shields.io/circleci/build/github/nextstrain/nextclade/master?label=build%3Amaster\" alt=\"CircleCI master branch\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://app.circleci.com/pipelines/github/nextstrain/nextclade?branch=staging\"\u003e\n    \u003cimg src=\"https://img.shields.io/circleci/build/github/nextstrain/nextclade/staging?label=build%3Astaging\" alt=\"CircleCI staging branch\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://app.circleci.com/pipelines/github/nextstrain/nextclade?branch=release\"\u003e\n    \u003cimg src=\"https://img.shields.io/circleci/build/github/nextstrain/nextclade/release?label=build%3Arelease\" alt=\"CircleCI release branch\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://app.circleci.com/pipelines/github/nextstrain/nextclade?branch=release-cli\"\u003e\n    \u003cimg src=\"https://img.shields.io/circleci/build/github/nextstrain/nextclade/release-cli?label=build%3Arelease-cli\" alt=\"CircleCI release-cli branch\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://securityheaders.com/?q=clades.nextstrain.org\u0026followRedirects=on\"\u003e\n    \u003cimg src=\"https://img.shields.io/security-headers?url=https%3A%2F%2Fclades.nextstrain.org\" alt=\"Security Headers\" /\u003e\n  \u003c/a\u003e\n  \u003ca href=\"https://observatory.mozilla.org/analyze/clades.nextstrain.org\"\u003e\n    \u003cimg src=\"https://img.shields.io/mozilla-observatory/grade/clades.nextstrain.org\" alt=\"Mozilla Observatory\" /\u003e\n  \u003c/a\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n  \u003ca href=\"https://github.com/nextstrain/nextclade/commits\"\u003e\n    \u003cimg\n      src=\"https://img.shields.io/github/last-commit/nextstrain/nextclade?logo=github\"\n      alt=\"GitHub last commit\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://github.com/nextstrain/nextclade/commits\"\u003e\n    \u003cimg\n      src=\"https://img.shields.io/github/commit-activity/w/nextstrain/nextclade\"\n      alt=\"GitHub commit activity\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://github.com/nextstrain/nextclade/graphs/contributors\"\u003e\n    \u003cimg\n      src=\"https://img.shields.io/github/contributors/nextstrain/nextclade?logo=github\u0026label=developers\"\n      alt=\"GitHub contributors\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://deepscan.io/dashboard#view=project\u0026tid=8207\u0026pid=12611\u0026bid=195750\"\u003e\n    \u003cimg src=\"https://deepscan.io/api/teams/8207/projects/12611/branches/195750/badge/grade.svg\" alt=\"DeepScan grade\"\u003e\n  \u003c/a\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n  \u003ca href=\"https://anaconda.org/bioconda/nextclade\"\u003e\n    \u003cimg\n      src=\"https://anaconda.org/bioconda/nextclade/badges/version.svg\"\n      alt=\"Nextclade\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://usegalaxy.eu/root?tool_id=nextclade\"\u003e\n    \u003cimg\n      src=\"https://img.shields.io/badge/usegalaxy-.eu-brightgreen?logo=data:image/png;base64,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\"\n      alt=\"European Galaxy server\"\n    /\u003e\n  \u003c/a\u003e\n\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n\n  \u003ca href=\"packages/web/package.json\"\u003e\n    \u003cimg\n      src=\"https://img.shields.io/github/package-json/v/nextstrain/nextclade/master/packages/nextclade-web?label=web\u0026logo=npm\"\n      alt=\"package.json version\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://github.com/nextstrain/nextclade/releases\"\u003e\n    \u003cimg src=\"https://img.shields.io/github/v/release/nextstrain/nextclade?logo=github\u0026label=cli\" alt=\"GitHub releases\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://hub.docker.com/r/nextstrain/nextalign\"\u003e\n      \u003cimg alt=\"Nextclade Docker image version\" src=\"https://img.shields.io/docker/v/nextstrain/nextclade?label=%F0%9F%90%8B%20%20%20docker%3Anextalign\"\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://hub.docker.com/r/nextstrain/nextclade\"\u003e\n      \u003cimg alt=\"Nextclade Docker image version\" src=\"https://img.shields.io/docker/v/nextstrain/nextclade?label=%F0%9F%90%8B%20%20%20docker%3Anextclade\"\u003e\n  \u003c/a\u003e\n\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n\n  \u003ca style=\"border-width:0\" href=\"https://doi.org/10.21105/joss.03773\"\u003e\n    \u003cimg src=\"https://joss.theoj.org/papers/10.21105/joss.03773/status.svg\" alt=\"JOSS publication\" \u003e\n  \u003c/a\u003e\n\n\u003c/p\u003e\n\n---\n\n\u003cp align=\"center\"\u003e\n  \u003ca href=\"https://clades.nextstrain.org\" target=\"_blank\" rel=\"noopener noreferrer\" \u003e\n    \u003cimg height=\"50px\"\n      src=\"https://img.shields.io/badge/%F0%9F%8C%8E%20Visit%20clades.nextstrain.org-%23aa1718.svg\"\n      alt=\"Visit clades.nextstrain.org button\"\n    /\u003e\n  \u003c/a\u003e\n\u003c/p\u003e\n\n\u003cp align=\"center\"\u003e\n\n  \u003ca href=\"https://docs.nextstrain.org/projects/nextclade/en/latest/\"\u003e\n    \u003cimg height=\"30px\"\n      src=\"https://img.shields.io/badge/%F0%9F%93%97%20Documentation-%231773B2.svg\"\n      alt=\"Documentation button\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://github.com/nextstrain/nextclade/issues/new\"\u003e\n    \u003cimg height=\"30px\"\n      src=\"https://img.shields.io/badge/%F0%9F%93%A2%20Report%20Issue-%2317992a.svg\"\n      alt=\"Report issue button\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://github.com/nextstrain/nextclade/issues/new\"\u003e\n    \u003cimg height=\"30px\"\n      src=\"https://img.shields.io/badge/%E2%9C%A8%20Request%20feature-%2317992a.svg\"\n      alt=\"Request feature button\"\n    /\u003e\n  \u003c/a\u003e\n\n  \u003ca href=\"https://discussion.nextstrain.org\"\u003e\n    \u003cimg height=\"30px\"\n      src=\"https://img.shields.io/badge/%F0%9F%92%AC%20Join%20discussion-%23d99852.svg\"\n      alt=\"Discuss button\"\n    /\u003e\n  \u003c/a\u003e\n\u003c/p\u003e\n\n\u003ch2 id=\"citation\" align=\"center\"\u003e\n📜️ Citation\n\u003c/h2\u003e\n\nIf you use results obtained with Nextclade in a publication, please\n\n - cite our paper:\n\n    \u003e Aksamentov, I., Roemer, C., Hodcroft, E. B., \u0026 Neher, R. A., (2021). Nextclade: clade assignment, mutation calling and quality control for viral genomes. Journal of Open Source Software, 6(67), 3773, https://doi.org/10.21105/joss.03773\n\n   ([bibtex](https://clades.nextstrain.org/citation.bib))\n\n - where possible, provide a link to Nextclade Web:\n\n    \u003e https://clades.nextstrain.org\n\n\n\u003ch2 id=\"documentation\" align=\"center\"\u003e\n📗 Documentation\n\u003c/h2\u003e\n\n - Documentation for Nextclade: https://docs.nextstrain.org/projects/nextclade\n - Documentation for the parent project, Nextstrain: https://docs.nextstrain.org\n\n\n\u003ch2 id=\"documentation\" align=\"center\"\u003e\n🧑‍💻 Development\n\u003c/h2\u003e\n\nRead developer guide here: [docs/dev/developer-guide.md](docs/dev/developer-guide.md)\n\n\u003ch2 id=\"team\" align=\"center\"\u003e\n ✨ Team\n\u003c/h2\u003e\n\n\u003cp\u003e\nNextclade is a part of\n\u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"https://nextstrain.org\"\u003e\n\u003cimg height=\"15px\"\n  src=\"https://github.com/nextstrain/nextclade/blob/master/docs/assets/nextstrain_logo.svg\"\n  alt=\"Nextstrain logo\"\n/\u003e\n\u003cspan\u003e \u003c/span\u003e\n\u003cspan\u003eNextstrain project\u003c/span\u003e\n\u003c/a\u003e.\u003c/p\u003e\n\n\nIt is maintained by:\n\n\u003cp align=\"center\"\u003e\n\u003ctable\u003e\n\u003ctr\u003e\n\u003ctd\u003e\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/ivan-aksamentov\"\u003e\n      \u003cimg alt=\"\" src=\"https://avatars.githubusercontent.com/u/9403403?s=100\u0026\u0026v=4\" width=\"100px;\" /\u003e\n    \u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/ivan-aksamentov\"\u003eIvan Aksamentov\u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003csmall\u003eSenior Software Engineer\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eNeherLab, Biozentrum, University of Basel\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eSwiss Institute of Bioinformatics\u003c/small\u003e\u003cbr /\u003e\n  \u003c/p\u003e\n\u003c/td\u003e\n\n\u003ctd\u003e\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/rneher\"\u003e\n      \u003cimg alt=\"\" src=\"https://avatars.githubusercontent.com/u/8379168?s=100\u0026\u0026v=4\" width=\"100px;\" /\u003e\n    \u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/rneher\"\u003eRichard Neher\u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003csmall\u003ePrincipal Investigator\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eNeherLab, Biozentrum, University of Basel\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eSwiss Institute of Bioinformatics\u003c/small\u003e\u003cbr /\u003e\n  \u003c/p\u003e\n\u003c/td\u003e\n\n\u003ctd\u003e\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/corneliusroemer\"\u003e\n      \u003cimg alt=\"\" src=\"https://avatars.githubusercontent.com/u/25161793?s=100\u0026\u0026v=4\" width=\"100px;\" /\u003e\n    \u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003ca href=\"https://github.com/corneliusroemer\"\u003eCornelius Roemer\u003c/a\u003e\n  \u003c/p\u003e\n\n  \u003cp align=\"center\"\u003e\n    \u003csmall\u003eStaff Scientist\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eNeherLab, Biozentrum, University of Basel\u003c/small\u003e\u003cbr /\u003e\n    \u003csmall\u003eSwiss Institute of Bioinformatics\u003c/small\u003e\u003cbr /\u003e\n  \u003c/p\u003e\n\u003c/td\u003e\n\u003c/tr\u003e\n\u003c/table\u003e\n\u003c/p\u003e\n\n\nWe are thankful to all our contributors, no matter how they contribute: in ideas, science, code, documentation or otherwise. Thanks goes to these people (\u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"https://allcontributors.org/docs/en/emoji-key\"\u003eemoji key\u003c/a\u003e):\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section --\u003e\n\u003c!-- prettier-ignore-start --\u003e\n\u003c!-- markdownlint-disable --\u003e\n\u003ctable\u003e\n  \u003ctbody\u003e\n    \u003ctr\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://github.com/emmahodcroft\"\u003e\u003cimg src=\"https://avatars1.githubusercontent.com/u/14290674?v=4?s=100\" width=\"100px;\" alt=\"Emma Hodcroft\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eEmma Hodcroft\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#ideas-emmahodcroft\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e \u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=emmahodcroft\" title=\"Tests\"\u003e⚠️\u003c/a\u003e \u003ca href=\"#talk-emmahodcroft\" title=\"Talks\"\u003e📢\u003c/a\u003e \u003ca href=\"https://github.com/nextstrain/nextclade/pulls?q=is%3Apr+reviewed-by%3Aemmahodcroft\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://github.com/anna-parker\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/50943381?v=4?s=100\" width=\"100px;\" alt=\"Anna Parker\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eAnna Parker\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=anna-parker\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=anna-parker\" title=\"Tests\"\u003e⚠️\u003c/a\u003e \u003ca href=\"#ideas-anna-parker\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://tsibley.net/\"\u003e\u003cimg src=\"https://avatars2.githubusercontent.com/u/79913?v=4?s=100\" width=\"100px;\" alt=\"Thomas Sibley\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eThomas Sibley\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#infra-tsibley\" title=\"Infrastructure (Hosting, Build-Tools, etc)\"\u003e🚇\u003c/a\u003e \u003ca href=\"#security-tsibley\" title=\"Security\"\u003e🛡️\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://github.com/victorlin\"\u003e\u003cimg src=\"https://avatars2.githubusercontent.com/u/13424970?v=4?s=100\" width=\"100px;\" alt=\"Victor Lin\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eVictor Lin\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=victorlin\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=victorlin\" title=\"Documentation\"\u003e📖\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"http://theo.io/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/19732295?v=4?s=100\" width=\"100px;\" alt=\"Theo Sanderson\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eTheo Sanderson\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=theosanderson\" title=\"Code\"\u003e💻\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"http://www.natalieastroud.com/\"\u003e\u003cimg src=\"https://avatars3.githubusercontent.com/u/17433156?v=4?s=100\" width=\"100px;\" alt=\"Natalie Stroud\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eNatalie Stroud\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#content-stroudn1\" title=\"Content\"\u003e🖋\u003c/a\u003e \u003ca href=\"#translation-stroudn1\" title=\"Translation\"\u003e🌍\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"http://www.rubinsteyn.com/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/48441?v=4?s=100\" width=\"100px;\" alt=\"Alex Rubinsteyn\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eAlex Rubinsteyn\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=iskandr\" title=\"Documentation\"\u003e📖\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://github.com/molecules\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/345060?v=4?s=100\" width=\"100px;\" alt=\"Christopher Bottoms\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eChristopher Bottoms\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=molecules\" title=\"Documentation\"\u003e📖\u003c/a\u003e\u003c/td\u003e\n    \u003c/tr\u003e\n    \u003ctr\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"http://finlaymagui.re/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/1698629?v=4?s=100\" width=\"100px;\" alt=\"Finlay Maguire\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eFinlay Maguire\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=fmaguire\" title=\"Documentation\"\u003e📖\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"12.5%\"\u003e\u003ca href=\"https://github.com/dnanto\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/49757922?v=4?s=100\" width=\"100px;\" alt=\"dnanto\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003ednanto\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/nextstrain/nextclade/commits?author=dnanto\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"#data-dnanto\" title=\"Data\"\u003e🔣\u003c/a\u003e\u003c/td\u003e\n    \u003c/tr\u003e\n  \u003c/tbody\u003e\n\u003c/table\u003e\n\n\u003c!-- markdownlint-restore --\u003e\n\u003c!-- prettier-ignore-end --\u003e\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:END --\u003e\n\nThis project follows the \u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"https://github.com/all-contributors/all-contributors\"\u003eall-contributors\u003c/a\u003e specification. Contributions of any kind welcome!\n\n\u003ch2 id=\"license\" align=\"center\"\u003e\n⚖️ License\n\u003c/h2\u003e\n\n\u003cp align=\"center\"\u003e\n  \u003ca target=\"_blank\" rel=\"noopener noreferrer\" href=\"../../LICENSE\" alt=\"License file\"\u003eMIT License\u003c/a\u003e\n\u003c/p\u003e\n","funding_links":[],"categories":["Rust","science"],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Fnextclade","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnextstrain%2Fnextclade","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Fnextclade/lists"}