{"id":23223087,"url":"https://github.com/nextstrain/oropouche","last_synced_at":"2025-04-05T16:29:56.857Z","repository":{"id":252878992,"uuid":"834213163","full_name":"nextstrain/oropouche","owner":"nextstrain","description":"Oropouche Nextstrain build ","archived":false,"fork":false,"pushed_at":"2024-12-20T18:33:23.000Z","size":276,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-02-11T13:28:59.402Z","etag":null,"topics":["nextstrain","pathogen"],"latest_commit_sha":null,"homepage":"https://nextstrain.org/staging/oropouche/L","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nextstrain.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-26T17:05:01.000Z","updated_at":"2024-12-20T18:33:25.000Z","dependencies_parsed_at":"2024-08-29T23:38:03.829Z","dependency_job_id":"9b8f6f5c-c258-4874-a421-ae7e31249fb2","html_url":"https://github.com/nextstrain/oropouche","commit_stats":null,"previous_names":["nextstrain/oropouche"],"tags_count":0,"template":false,"template_full_name":"nextstrain/pathogen-repo-guide","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Foropouche","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Foropouche/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Foropouche/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Foropouche/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nextstrain","download_url":"https://codeload.github.com/nextstrain/oropouche/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247365137,"owners_count":20927272,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["nextstrain","pathogen"],"created_at":"2024-12-18T23:16:01.129Z","updated_at":"2025-04-05T16:29:56.839Z","avatar_url":"https://github.com/nextstrain.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Nextstrain repository for Oropouche virus\nThis repository contains two workflows for the analysis of Oropouche virus data:\n\n- [`ingest/`](./ingest) - Download data from GenBank, clean and curate it and upload it to S3\n- [`phylogenetic/`](./phylogenetic) - Filter sequences, align, construct phylogeny and export for visualization\n\nEach folder contains a README.md with more information.\n\n## Installation\n\nFollow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools.\n\n## Quickstart\n\nRun the default phylogenetic workflow via:\n```\ncd phylogenetic/\nnextstrain build .\nnextstrain view .\n```\n\n## Documentation\n\n- [Running a pathogen workflow](https://docs.nextstrain.org/en/latest/tutorials/running-a-workflow.html)\n- [Contributor documentation](./CONTRIBUTING.md)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Foropouche","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnextstrain%2Foropouche","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Foropouche/lists"}