{"id":23223110,"url":"https://github.com/nextstrain/rabies","last_synced_at":"2025-10-23T16:56:42.776Z","repository":{"id":248174306,"uuid":"813349303","full_name":"nextstrain/rabies","owner":"nextstrain","description":null,"archived":false,"fork":false,"pushed_at":"2025-01-17T19:58:43.000Z","size":155,"stargazers_count":0,"open_issues_count":5,"forks_count":0,"subscribers_count":8,"default_branch":"main","last_synced_at":"2025-02-11T13:29:07.615Z","etag":null,"topics":["nextstrain","pathogen"],"latest_commit_sha":null,"homepage":"https://nextstrain.org/rabies","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nextstrain.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-06-10T23:09:15.000Z","updated_at":"2025-01-17T19:58:43.000Z","dependencies_parsed_at":"2025-01-13T19:32:02.543Z","dependency_job_id":"59a25c3f-106f-4bc6-a023-81de48e6f568","html_url":"https://github.com/nextstrain/rabies","commit_stats":null,"previous_names":["nextstrain/rabies"],"tags_count":0,"template":false,"template_full_name":"nextstrain/pathogen-repo-guide","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Frabies","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Frabies/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Frabies/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nextstrain%2Frabies/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nextstrain","download_url":"https://codeload.github.com/nextstrain/rabies/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247365132,"owners_count":20927271,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["nextstrain","pathogen"],"created_at":"2024-12-18T23:16:06.224Z","updated_at":"2025-10-23T16:56:42.665Z","avatar_url":"https://github.com/nextstrain.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Nextstrain repository for rabies virus\nThis repository contains two workflows for the analysis of rabies virus data:\n\n- [`ingest/`](./ingest) - Download data from GenBank, clean and curate it and upload it to S3\n- [`phylogenetic/`](./phylogenetic) - Filter sequences, align, construct phylogeny and export for visualization\n\nEach folder contains a README.md with more information. The results of running both workflows are publicly visible at [nextstrain.org/rabies](https://nextstrain.org/rabies).\n\n## Installation\n\nFollow the [standard installation instructions](https://docs.nextstrain.org/en/latest/install.html) for Nextstrain's suite of software tools.\n\n## Quickstart\n\nRun the default phylogenetic workflow via:\n```\ncd phylogenetic/\nnextstrain build .\nnextstrain view .\n```\n\n## Documentation\n\n- [Running a pathogen workflow](https://docs.nextstrain.org/en/latest/tutorials/running-a-workflow.html)\n- [Contributor documentation](./CONTRIBUTING.md)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Frabies","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnextstrain%2Frabies","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnextstrain%2Frabies/lists"}