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 \u003cpicture\u003e\n    \u003csource media=\"(prefers-color-scheme: dark)\" srcset=\"https://raw.githubusercontent.com/nf-core/tools/main/docs/images/nfcore-tools_logo_dark.png\"\u003e\n    \u003cimg alt=\"nf-core/tools\" src=\"https://raw.githubusercontent.com/nf-core/tools/main/docs/images/nfcore-tools_logo_light.png\"\u003e\n  \u003c/picture\u003e\n\u003c/h1\u003e\u003c!-- omit in toc --\u003e\n\n[![Python tests](https://github.com/nf-core/tools/workflows/Python%20tests/badge.svg?branch=main\u0026event=push)](https://github.com/nf-core/tools/actions?query=workflow%3A%22Python+tests%22+branch%3Amain)\n[![codecov](https://codecov.io/gh/nf-core/tools/branch/main/graph/badge.svg)](https://codecov.io/gh/nf-core/tools)\n[![code style: prettier](https://img.shields.io/badge/code%20style-prettier-ff69b4.svg)](https://github.com/prettier/prettier)\n[![code style: Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v1.json)](https://github.com/charliermarsh/ruff)\n\n[![install with Bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg)](https://bioconda.github.io/recipes/nf-core/README.html)\n[![install with PyPI](https://img.shields.io/badge/install%20with-PyPI-blue.svg)](https://pypi.org/project/nf-core/)\n[![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23tools-4A154B?logo=slack)](https://nfcore.slack.com/channels/tools)\n\nA python package with helper tools for the nf-core community.\n\nThe nf-core tools package is written in Python and can be imported and used within other packages.\nFor documentation of the internal Python functions, please refer to the [Tools Python API docs](https://nf-co.re/tools/docs/).\n\n## Installation\n\nFor full installation instructions, please see the [nf-core documentation](https://nf-co.re/docs/nf-core-tools/installation).\nBelow is a quick-start for those who know what they're doing:\n\n### Bioconda\n\nInstall [from Bioconda](https://bioconda.github.io/recipes/nf-core/README.html):\n\n```bash\nconda install nf-core\n```\n\nAlternatively, you can create a new environment with both nf-core/tools and nextflow:\n\n```bash\nconda create --name nf-core python=3.14 nf-core nextflow\nconda activate nf-core\n```\n\n### Python Package Index\n\nInstall [from PyPI](https://pypi.python.org/pypi/nf-core/):\n\n```bash\npip install nf-core\n```\n\n### Development version\n\n```bash\npip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev\n```\n\nIf editing, fork and clone the repo, then install as follows:\n\n```bash\npip install --upgrade -r requirements-dev.txt -e .\n```\n\n## Contributions and Support\n\nIf you would like to contribute to this package, please see the [contributing guidelines](CONTRIBUTING.md).\n\nFor further information or help, don't hesitate to get in touch on the [Slack `#tools` channel](https://nfcore.slack.com/channels/tools) (you can join with [this invite](https://nf-co.re/join/slack)).\n\n## Citation\n\nIf you use `nf-core tools` in your work, please cite the `nf-core` publication as follows:\n\n\u003e **The nf-core framework for community-curated bioinformatics pipelines.**\n\u003e\n\u003e Philip Ewels, Alexander Peltzer, Sven Fillinger, Harshil Patel, Johannes Alneberg, Andreas Wilm, Maxime Ulysse Garcia, Paolo Di Tommaso \u0026 Sven Nahnsen.\n\u003e\n\u003e _Nat Biotechnol._ 2020 Feb 13. doi: [10.1038/s41587-020-0439-x](https://dx.doi.org/10.1038/s41587-020-0439-x).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnf-core%2Ftools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnf-core%2Ftools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnf-core%2Ftools/lists"}