{"id":22735511,"url":"https://github.com/nfdi4plants/arc-validate","last_synced_at":"2026-04-02T01:15:49.261Z","repository":{"id":109120813,"uuid":"602938171","full_name":"nfdi4plants/arc-validate","owner":"nfdi4plants","description":"Libraries and CLI tools for creation, consumption, and execution of ARC validation packages","archived":false,"fork":false,"pushed_at":"2026-02-26T10:05:12.000Z","size":1506,"stargazers_count":4,"open_issues_count":31,"forks_count":3,"subscribers_count":3,"default_branch":"release","last_synced_at":"2026-02-26T16:01:09.408Z","etag":null,"topics":["arc","dataplant","docker","dotnet","expecto","fsharp","isa-dotnet","nfdi4plants","unit-testing","validation"],"latest_commit_sha":null,"homepage":"https://nfdi4plants.github.io/arc-validate/","language":"F#","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nfdi4plants.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2023-02-17T09:12:15.000Z","updated_at":"2026-02-26T10:05:17.000Z","dependencies_parsed_at":"2023-12-11T02:24:20.162Z","dependency_job_id":"808e5030-0395-41af-b1ed-c342f202ca43","html_url":"https://github.com/nfdi4plants/arc-validate","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/nfdi4plants/arc-validate","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nfdi4plants%2Farc-validate","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nfdi4plants%2Farc-validate/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nfdi4plants%2Farc-validate/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nfdi4plants%2Farc-validate/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nfdi4plants","download_url":"https://codeload.github.com/nfdi4plants/arc-validate/tar.gz/refs/heads/release","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nfdi4plants%2Farc-validate/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31293748,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-02T01:05:07.454Z","status":"ssl_error","status_checked_at":"2026-04-02T00:56:46.496Z","response_time":53,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["arc","dataplant","docker","dotnet","expecto","fsharp","isa-dotnet","nfdi4plants","unit-testing","validation"],"created_at":"2024-12-10T21:11:16.932Z","updated_at":"2026-04-02T01:15:49.252Z","avatar_url":"https://github.com/nfdi4plants.png","language":"F#","funding_links":[],"categories":[],"sub_categories":[],"readme":"# arc-validate\n\nHome of all the tools and libraries to create and run validation of ARCs:\n\n- **ARCExpect** ([docs :notebook:](https://nfdi4plants.github.io/arc-validate/ARCExpect/introduction.html)) - easy to use and understand APIs to create and execute validation cases.\n- **ARCValidationPackages** ([docs :notebook:](https://nfdi4plants.github.io/arc-validate/ARCValidationPackages/introduction.html)) - package for installing, updating, and executing ARC validation packages.\n- **arc-validate/** ([docs :notebook:](https://nfdi4plants.github.io/arc-validate/arc-validate/introduction.html)) - CLI tool that offers commands for validating ARCs and managing validation packages.\n\n## Docker container\n\nThis repository provides a [docker container](https://github.com/nfdi4plants/arc-validate/pkgs/container/arc-validate) that has the `arc-validate` tool pre-installed for using it in [DataHUB](https://git.nfdi4plants.org/explore)-CI jobs.\n\nUse the containers tagged with [main](https://github.com/nfdi4plants/arc-validate/pkgs/container/arc-validate/174978018?tag=main) for production use.\n\n## Project aim\n\nValidation of ARCs based on:\n- **ARCTokenization**: Structural ontologies for file formats (for parsing/tokenizing files): INVMSO, STDMSO, ASSMSO\n- **OBO.NET**:\n    - parsing ontologies, generation of **OBO graphs** based on ontology term relation\n    - code genearation of ontology modules with accessible terms\n- **ARCGraph**: Graph representation of file content based on structural ontologies via **OBO graph**\n- **Graph-based** completion of File content (missing cells -\u003e empty tokens) via **ARCGraph**\n- **ARCExpect.Core**: Expecto-like API for validation\n- **ARCExpect**: ARC aware API for validation cases\n- **Validation Packages**: API for installing and executing additional validation packages\n\n## Project layout\n\n### Dependency visualization\n\n```mermaid\nflowchart TD\n\nControlledVocabulary(\"\u003cb\u003eControlledVocabulary:\u003c/b\u003e\u003cbr\u003eData model for CVs\")\nARCTokenization(\"\u003cb\u003eARCTokenization:\u003c/b\u003e\u003cbr\u003eTokenization of ARCs into CVs\")\nOBO.NET(\"\u003cb\u003eOBO.NET:\u003c/b\u003e\u003cbr\u003eOBO Ontology data model and parsing\")\nARCGraph(\"\u003cb\u003eARCGraph:\u003c/b\u003e\u003cbr\u003eGraph based on structural ontologies\")\nARCExpect(\"\u003cb\u003eARCExpect:\u003c/b\u003e\u003cbr\u003eARC aware API for validation\")\nARCExpect.Core(\"\u003cb\u003eARCExpect.Core:\u003c/b\u003e\u003cbr\u003eExpecto-like API for validation\")\nARCValidationPackages(\"\u003cb\u003eARCValidationPackages:\u003c/b\u003e\u003cbr\u003eAPI for additional validation packages\")\narc-validate(\"\u003cb\u003earc-validate:\u003c/b\u003e\u003cbr\u003evalidation CLI tool\")\n\narc-validate --depends on--\u003e ARCExpect\narc-validate --depends on--\u003e ARCValidationPackages\nARCTokenization --depends on--\u003e ControlledVocabulary\nARCTokenization --depends on--\u003e OBO.NET\nARCExpect --depends on--\u003e ARCExpect.Core\nARCExpect --depends on--\u003e ARCGraph\nARCExpect --depends on--\u003e ARCTokenization\nARCGraph --depends on--\u003e ARCTokenization\nARCGraph --depends on--\u003e OBO.NET\n```\n\n### Libraries used\n\n#### ARCExpect\n\n- [ARCTokenization](https://github.com/nfdi4plants/ARCTokenization)\n- [AVPRIndex](https://github.com/nfdi4plants/arc-validate-package-registry)\n- [OBO.NET](https://github.com/CSBiology/OBO.NET)\n- [Graphoscope](https://github.com/fslaborg/Graphoscope)\n- [Cytoscape.NET](https://github.com/fslaborg/Cytoscape.NET)\n- [AnyBadge.NET](https://github.com/kMutagene/AnyBadge.NET)\n- [FSharp.SystemTextJson](https://github.com/Tarmil/FSharp.SystemTextJson)\n- [FSharpAux](https://github.com/CSBiology/FSharpAux)\n- [FsSpreadsheet](https://github.com/fslaborg/FsSpreadsheet)\n- [Expecto](https://github.com/haf/expecto)\n\n### ARCValidationPackages\n\n- [Fake.DotNet.Cli](https://github.com/fsprojects/FAKE)\n- [FsHttp](https://github.com/fsprojects/FsHttp)\n- [AVPRIndex](https://github.com/nfdi4plants/arc-validate-package-registry)\n- [AVPRClient](https://github.com/nfdi4plants/arc-validate-package-registry)\n\n#### arc-validate\n\n- ARCExpect\n- ARCValidationPackages\n- [Argu](https://github.com/fsprojects/Argu)\n- [Expecto](https://github.com/haf/expecto)\n- [Spectre.Console](https://github.com/spectreconsole/spectre.console)\n\n\n## Development\n\nFor how to contribute to and how to develop on this project, please read the [Contributing guidelines](https://github.com/nfdi4plants/arc-validate/blob/release/CONTRIBUTING.md).\n\n\nJust call `build.sh` or `build.cmd` depending on your OS.\n\n### Test\n\ntest setup is interconnected with production services, running tests for the compiled `arc-validate` tool with validation packages with source https://avpr.nfdi4plants.org.\n\nsince testing the cli tool relies on it being compiled via `dotnet publish`, either use the build scripts or manually publish `arc-validate` to the `/publish` folder when using e.g. TestExplorers.\n\n```bash\nbuild.sh runtests\n```\n\n```bash\nbuild.cmd runtests\n```\n\n### Create Nuget package\n\n```bash\nbuild.sh pack\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnfdi4plants%2Farc-validate","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnfdi4plants%2Farc-validate","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnfdi4plants%2Farc-validate/lists"}