{"id":23628588,"url":"https://github.com/nhs-transformation-unit/hs_ds_ibs_des","last_synced_at":"2025-11-08T01:30:22.019Z","repository":{"id":229824406,"uuid":"773928658","full_name":"NHS-Transformation-Unit/HS_DS_IBS_DES","owner":"NHS-Transformation-Unit","description":"Repository for the example codebase for constructing a DES pathway model","archived":false,"fork":false,"pushed_at":"2024-03-18T17:09:27.000Z","size":942,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-28T00:46:34.198Z","etag":null,"topics":["discrete-event-simulation","pathway-models","r","rmarkdown"],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NHS-Transformation-Unit.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null}},"created_at":"2024-03-18T16:37:10.000Z","updated_at":"2024-04-09T12:52:28.000Z","dependencies_parsed_at":"2024-03-26T13:30:56.063Z","dependency_job_id":"ab6b793c-2622-4391-88bc-e36541bb396b","html_url":"https://github.com/NHS-Transformation-Unit/HS_DS_IBS_DES","commit_stats":null,"previous_names":["nhs-transformation-unit/hs_ds_ibs_des"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHS_DS_IBS_DES","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHS_DS_IBS_DES/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHS_DS_IBS_DES/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHS_DS_IBS_DES/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NHS-Transformation-Unit","download_url":"https://codeload.github.com/NHS-Transformation-Unit/HS_DS_IBS_DES/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239543667,"owners_count":19656410,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["discrete-event-simulation","pathway-models","r","rmarkdown"],"created_at":"2024-12-28T00:46:38.148Z","updated_at":"2025-11-08T01:30:21.915Z","avatar_url":"https://github.com/NHS-Transformation-Unit.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cimg src=\"images/logos/tu_rainbow.svg\" alt=\"TU logo\" width=\"100%\" align=\"right\"/\u003e\n\n\u003cbr/\u003e\n\n\u003cimg src=\"images/logos/TU_logo_large.png\" alt=\"TU logo\" width=\"200\" align=\"right\"/\u003e\n\n# Clinical Pathway Mapping - Simulating Patient Pathway Example Through DES\nThis repository contains the codebase for the modelling of an example proposed re-designed Hysteroscopy pathway. This model has been developed in R, details on the structure of the repository and how to amend and run the model are detailed below.\n\n\n## Using the Repository\nThe repository can be cloned to run the pathway model. Changing the inputs in the `config` folder will enable alternate scenarios of the pathway to be run.\n\n\n## Repository Structure\n\nThe structure of this repository is detailed below:\n\n``` plaintext\n\n├───data\n├───documentation\n    ├───guidance\n    └───project_documentation\n├───images\n    ├───logos\n    └───pathway\n└───src\n    ├───config\n        ├───model_inputs\n        └───outputs\n    ├───load\n    ├───model\n    ├───outputs\n    ├───processing\n    └───requirements\n\n```\n\n### `data`\nTo contain any datasets received from the client to support the model build or underpinning assumptions.\n\n### `documentation`\nContains the project documentation such as specification of the model within the `project_documentation` folder. The `guidance` folder contains information on model structure and how to run.\n\n### `images`\nImages such as TU logos and branding to add to outputs are contained in the `logos` folder. The `pathway` folder hosts the **draw.io** outputs of the proposed pathway that has been modelled.\n\n### `src`\n\nAll code is stored in src. This is subdivided into six modules:\n\n1. `config`: Files for configuring the output such as the `theme.css` are stored in the `outputs` folder. The `model_inputs` folder contains the code for setting inputs for the model which can be changed here by the user.\n2. `load`: Files for loading any datasets from the `data` folder are stored here.\n3. `model`: Files for building and running the pathway model are stored here.\n4. `outputs`: Files for creating the outputs of the model are stored here.\n5. `processing`: Processing steps such as cleaning or feature creation on any data loaded into the model are stored here.\n6. `requirements`: The requirements folder stores the `packages.R` file containing the list of packages required to run the model.\n\n## Proposed Pathway to Model\n\nThe pathway below represents the _to-be_ pathway that is being modelled:\n\n\u003cimg src=\"images/pathway/proposed_pathway.drawio.svg\" alt=\"Proposed Pathway\"/\u003e\n\n## Contributors\nThis repository has been created and developed by:\n\n-   [Andy Wilson](https://github.com/ASW-Analyst)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnhs-transformation-unit%2Fhs_ds_ibs_des","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnhs-transformation-unit%2Fhs_ds_ibs_des","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnhs-transformation-unit%2Fhs_ds_ibs_des/lists"}