{"id":23628578,"url":"https://github.com/nhs-transformation-unit/hsds_mash","last_synced_at":"2025-11-08T00:30:38.131Z","repository":{"id":260087849,"uuid":"822515017","full_name":"NHS-Transformation-Unit/HSDS_MASH","owner":"NHS-Transformation-Unit","description":"Repository for all analysis, modelling and pathway mapping for the MASH pathway","archived":false,"fork":false,"pushed_at":"2024-10-29T10:15:22.000Z","size":2207,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2024-12-28T00:46:32.635Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/NHS-Transformation-Unit.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-07-01T09:48:20.000Z","updated_at":"2024-10-29T10:19:03.000Z","dependencies_parsed_at":"2024-10-29T13:41:49.268Z","dependency_job_id":null,"html_url":"https://github.com/NHS-Transformation-Unit/HSDS_MASH","commit_stats":null,"previous_names":["nhs-transformation-unit/hsds_mash"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHSDS_MASH","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHSDS_MASH/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHSDS_MASH/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/NHS-Transformation-Unit%2FHSDS_MASH/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/NHS-Transformation-Unit","download_url":"https://codeload.github.com/NHS-Transformation-Unit/HSDS_MASH/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239543548,"owners_count":19656374,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-28T00:46:36.008Z","updated_at":"2025-02-18T20:26:24.767Z","avatar_url":"https://github.com/NHS-Transformation-Unit.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003cimg src=\"images/TU_logo_large.png\" alt=\"TU logo\" width=\"200\" align=\"right\"/\u003e\n\n# Horizon Scanning, Demand Signalling (HSDS): MASH Pathway Analysis and Modelling Repository\nThis repository contains the codebase for undertaking all analysis and modelling of the MASH pathway.\n\n\u003cbr/\u003e\n\n## Table of Contents\n\n- [Repository Structure](#repository-structure)\n- [Getting Started](#getting-started)\n- [Contributors](#contributors)\n- [License](#license)\n\n## Repository Structure\nThe current structure of the repository is detailed below:\n\n``` plaintext\n\n├───README.md\n├───LICENSE\n├───.gitignore\n├───.Rproj\n├───data\n    ├───raw\n    ├───reference\n    └───theograph\n├───documentation\n    └───project_documentation\n├───images\n    └───theograph_example\n└───src\n    ├───config\n    ├───outputs\n    ├───requirements\n    ├───results\n      ├───charts\n      └───tables\n    └───scripts\n      ├───analysis\n      ├───etl\n        └───udal_extracts\n      ├───processing\n      └───visualisation\n    \n```\n\n- `README.md`: This file containing an overview and instructions for using the repository.\n- `LICENSE`: License information for the repository.\n- `.gitignore`: Specifies the files and folders that are ignored (not tracked) in the repository.\n- `.Rproj`: The RStudio project file.\n- `data`: Directory for data files used in the analysis\n  - `reference`: Any reference files such as geospatial datasets or data dictionary files used in the analysis.\n- `documentation`: Additional documentation that is helpful for understanding and replicating analysis and modelling.\n- `images`: Directory containing any logos and other images used in creating outputs for the repository.\n- `src`: All source code used for any analysis and modelling. This is comprised of the following:\n  - `config`: Directory contains configuration files for outputs such as css and ggplot themes.\n  - `outputs`: Contains the output files used to render the analysis or modelling such as `.qmd` or `.rmd`\n  - `requirements`: Contains information on requirements for the repository. Scripts for required R packages and loading these into the environment.\n  - `results`: Outputs of analysis or modelling such as specific charts and tables to be rendered in the `outputs`.\n  - `scripts`: Directory containing the code used within the analysis and modelling. This is further broken down into:\n    1. `analysis`: Scripts for analysing MASH datasets.\n    2. `etl`: Scripts for loading datasets into environment.\n    3. `processing`: Scripts for processing and cleaning loaded datasets.\n    4. `visualisation`: Scripts for creating visualisations and functions for analysis.\n    \n\u003cbr/\u003e\n\n## Getting Started\nThis analysis has been undertaken in R and RStudio. You will need to have these installed to replicate the analysis or use an alternative IDE. The R packages that are required for replicating analysis and modelling are documented within the `requirements` directory.\n\nThe repository can be cloned locally using:\n\n```\n\ngit clone https://github.com/NHS-Transformation-Unit/HSDS_MASH.git\n\n```\n\n\u003cbr/\u003e\n\n## Contributors\nThis repository has been created and developed by:\n\n- [Andy Wilson](https://github.com/ASW-Analyst)\n\n\u003cbr/\u003e\n\n## License\nThis project is licensed under the **GPL-3.0 license** - see the `LICENSE` file for details.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnhs-transformation-unit%2Fhsds_mash","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnhs-transformation-unit%2Fhsds_mash","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnhs-transformation-unit%2Fhsds_mash/lists"}