{"id":13688883,"url":"https://github.com/nimh-dsst/dataset-phenotypes","last_synced_at":"2026-01-22T00:36:31.306Z","repository":{"id":67035866,"uuid":"567824366","full_name":"nimh-dsst/dataset-phenotypes","owner":"nimh-dsst","description":"Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.","archived":false,"fork":false,"pushed_at":"2023-08-01T13:57:22.000Z","size":8007,"stargazers_count":9,"open_issues_count":13,"forks_count":2,"subscribers_count":5,"default_branch":"main","last_synced_at":"2026-01-13T01:25:38.415Z","etag":null,"topics":["abcd","abcd-study","abide","abide-data","bids","data-dictionary","dataset","datasets","hbn","hcp","nki","phenotype","phenotypic","pnc","tabular","tabular-data","ukb","ukbb","ukbiobank"],"latest_commit_sha":null,"homepage":"https://bids-phenotype.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"cc0-1.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/nimh-dsst.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-11-18T17:04:39.000Z","updated_at":"2025-03-10T22:47:00.000Z","dependencies_parsed_at":"2023-12-18T15:13:17.893Z","dependency_job_id":"84a95d24-bedc-467f-b92f-73b43af2f973","html_url":"https://github.com/nimh-dsst/dataset-phenotypes","commit_stats":{"total_commits":125,"total_committers":6,"mean_commits":"20.833333333333332","dds":"0.43999999999999995","last_synced_commit":"2bc1ce7d656bf448f35fa4ca8c121ac356793454"},"previous_names":["ericearl/dataset-phenotypes"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/nimh-dsst/dataset-phenotypes","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nimh-dsst%2Fdataset-phenotypes","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nimh-dsst%2Fdataset-phenotypes/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nimh-dsst%2Fdataset-phenotypes/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nimh-dsst%2Fdataset-phenotypes/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/nimh-dsst","download_url":"https://codeload.github.com/nimh-dsst/dataset-phenotypes/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nimh-dsst%2Fdataset-phenotypes/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28648460,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-21T21:29:11.980Z","status":"ssl_error","status_checked_at":"2026-01-21T21:24:31.872Z","response_time":86,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["abcd","abcd-study","abide","abide-data","bids","data-dictionary","dataset","datasets","hbn","hcp","nki","phenotype","phenotypic","pnc","tabular","tabular-data","ukb","ukbb","ukbiobank"],"created_at":"2024-08-02T15:01:26.309Z","updated_at":"2026-01-22T00:36:31.301Z","avatar_url":"https://github.com/nimh-dsst.png","language":"Python","funding_links":[],"categories":["Python"],"sub_categories":[],"readme":"[![DOI](https://zenodo.org/badge/567824366.svg)](https://zenodo.org/badge/latestdoi/567824366)\n[![All Contributors](https://img.shields.io/badge/all_contributors-8-orange.svg?style=flat-square)](#contributors-)\n![Brainhack DC Badge](https://img.shields.io/badge/brainhackdc-Capitol%20Cognition-blue?logo=data:image/png;base64,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)\n\n# Big neuroimaging dataset BIDS tabular phenotype tools\n\nPreparatory scripts to output BIDS phenotypic data dictionaries and transform phenotypic data to BIDS TSVs for common neuroimaging datasets.\n\nThese tools follow the guidelines of [BIDS Extension Proposal 36 (BEP036)](https://docs.google.com/document/d/1WTkfES8L0vItZVyyR68fc-9cO03jS-kCnMnw6602pbc/edit#heading=h.gjdgxs). The hope is for researchers to embrace this BIDS Phenotypic Data standard by seeing examples in their favorite datasets.\n\n## Use GitHub Issues with this repository\n\nThe GitHub Issues page found here should be used to communicate all of the following:\n\n1. Asking **questions** of any size or difficulty\n1. Providing **feedback** on any file's inaccuracies or considering changes\n1. Suggesting or requesting **features**\n1. Making **new dataset requests** (describe how to download the phenotypic data dictionaries and phenotypic data and it will be added to the queue\n1. Proposing **ideas** to improve the repository\n1. Reporting **bugs** in scripts or any other repository files\n1. **Corrections** to README.md files, dictionary entries, or whole assessments\n1. Style **suggestions** or suggested common conventions for scripts, dictionaries, or README.md files\n1. **Anything else** that isn't a code contribution or a pull request\n\n## How to Pull Request\n\nPull Requests (PRs) are also always welcome here to initiate a review of some fix or addition or change to the repository. Please fork, make your changes, and then initiate a PR from your fork back to this repository's `main` branch.\n\n## Contributors ✨\n\nContributors are always welcome to add GitHub Issues (see section above). Thanks especially go to these wonderful people ([emoji key](https://allcontributors.org/docs/en/emoji-key)):\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section --\u003e\n\u003c!-- prettier-ignore-start --\u003e\n\u003c!-- markdownlint-disable --\u003e\n\u003ctable\u003e\n  \u003ctbody\u003e\n    \u003ctr\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://ericearl.github.io/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/5580023?v=4?s=100\" width=\"100px;\" alt=\"Eric Earl\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eEric Earl\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/ericearl/dataset-phenotypes/issues?q=author%3Aericearl\" title=\"Bug reports\"\u003e🐛\u003c/a\u003e \u003ca href=\"https://github.com/ericearl/dataset-phenotypes/commits?author=ericearl\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"#content-ericearl\" title=\"Content\"\u003e🖋\u003c/a\u003e \u003ca href=\"#data-ericearl\" title=\"Data\"\u003e🔣\u003c/a\u003e \u003ca href=\"#design-ericearl\" title=\"Design\"\u003e🎨\u003c/a\u003e \u003ca href=\"#ideas-ericearl\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e \u003ca href=\"#maintenance-ericearl\" title=\"Maintenance\"\u003e🚧\u003c/a\u003e \u003ca href=\"#projectManagement-ericearl\" title=\"Project Management\"\u003e📆\u003c/a\u003e \u003ca href=\"https://github.com/ericearl/dataset-phenotypes/pulls?q=is%3Apr+reviewed-by%3Aericearl\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://jessicadafflon.github.io/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/10345440?v=4?s=100\" width=\"100px;\" alt=\"Jessica Dafflon\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eJessica Dafflon\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/ericearl/dataset-phenotypes/issues?q=author%3AJessyD\" title=\"Bug reports\"\u003e🐛\u003c/a\u003e \u003ca href=\"https://github.com/ericearl/dataset-phenotypes/commits?author=JessyD\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"#content-JessyD\" title=\"Content\"\u003e🖋\u003c/a\u003e \u003ca href=\"#ideas-JessyD\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e \u003ca href=\"#projectManagement-JessyD\" title=\"Project Management\"\u003e📆\u003c/a\u003e \u003ca href=\"https://github.com/ericearl/dataset-phenotypes/pulls?q=is%3Apr+reviewed-by%3AJessyD\" title=\"Reviewed Pull Requests\"\u003e👀\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://faskowit.github.io/\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/3308660?v=4?s=100\" width=\"100px;\" alt=\"Josh Faskowitz\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eJosh Faskowitz\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/ericearl/dataset-phenotypes/commits?author=faskowit\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"#ideas-faskowit\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://github.com/RobertoFelipeSG\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/38394703?v=4?s=100\" width=\"100px;\" alt=\"RobertoFelipeSG\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eRobertoFelipeSG\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/ericearl/dataset-phenotypes/commits?author=RobertoFelipeSG\" title=\"Code\"\u003e💻\u003c/a\u003e \u003ca href=\"#design-RobertoFelipeSG\" title=\"Design\"\u003e🎨\u003c/a\u003e \u003ca href=\"#ideas-RobertoFelipeSG\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e\u003c/td\u003e\n    \u003c/tr\u003e\n    \u003ctr\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"http://cmn.nimh.nih.gov/dsst\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/10297203?v=4?s=100\" width=\"100px;\" alt=\"Arshitha Basavaraj\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eArshitha Basavaraj\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"https://github.com/ericearl/dataset-phenotypes/issues?q=author%3AArshitha\" title=\"Bug reports\"\u003e🐛\u003c/a\u003e \u003ca href=\"#content-Arshitha\" title=\"Content\"\u003e🖋\u003c/a\u003e \u003ca href=\"#ideas-Arshitha\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://cmn.nimh.nih.gov/dsst\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/7197889?v=4?s=100\" width=\"100px;\" alt=\"Dustin Moraczewski\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eDustin Moraczewski\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#data-dmoracze\" title=\"Data\"\u003e🔣\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://github.com/agt24\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/7869017?v=4?s=100\" width=\"100px;\" alt=\"Adam Thomas\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eAdam Thomas\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#content-agt24\" title=\"Content\"\u003e🖋\u003c/a\u003e \u003ca href=\"#ideas-agt24\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e \u003ca href=\"#projectManagement-agt24\" title=\"Project Management\"\u003e📆\u003c/a\u003e\u003c/td\u003e\n      \u003ctd align=\"center\" valign=\"top\" width=\"14.28%\"\u003e\u003ca href=\"https://github.com/tsuipen\"\u003e\u003cimg src=\"https://avatars.githubusercontent.com/u/6072139?v=4?s=100\" width=\"100px;\" alt=\"Francisco Pereira\"/\u003e\u003cbr /\u003e\u003csub\u003e\u003cb\u003eFrancisco Pereira\u003c/b\u003e\u003c/sub\u003e\u003c/a\u003e\u003cbr /\u003e\u003ca href=\"#ideas-tsuipen\" title=\"Ideas, Planning, \u0026 Feedback\"\u003e🤔\u003c/a\u003e \u003ca href=\"#projectManagement-tsuipen\" title=\"Project Management\"\u003e📆\u003c/a\u003e\u003c/td\u003e\n    \u003c/tr\u003e\n  \u003c/tbody\u003e\n\u003c/table\u003e\n\n\u003c!-- markdownlint-restore --\u003e\n\u003c!-- prettier-ignore-end --\u003e\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:END --\u003e\n\nThis project follows the [all-contributors](https://github.com/all-contributors/all-contributors) specification. 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