{"id":21925503,"url":"https://github.com/node/circos-cn","last_synced_at":"2026-02-16T16:04:57.965Z","repository":{"id":145411315,"uuid":"70701998","full_name":"node/circos-cn","owner":"node","description":"Circos  Tutorial Chinese Version       Circos教程中文版 By Circos中文社区","archived":false,"fork":false,"pushed_at":"2023-04-19T08:51:42.000Z","size":8,"stargazers_count":6,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-22T11:42:41.822Z","etag":null,"topics":["circos","data-visualization","visualization"],"latest_commit_sha":null,"homepage":"https://groups.google.com/group/circos-cn","language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/node.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-10-12T13:21:18.000Z","updated_at":"2024-05-28T09:42:32.000Z","dependencies_parsed_at":"2023-06-03T17:30:37.054Z","dependency_job_id":null,"html_url":"https://github.com/node/circos-cn","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/node/circos-cn","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/node%2Fcircos-cn","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/node%2Fcircos-cn/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/node%2Fcircos-cn/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/node%2Fcircos-cn/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/node","download_url":"https://codeload.github.com/node/circos-cn/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/node%2Fcircos-cn/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":279000680,"owners_count":26082817,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-08T02:00:06.501Z","response_time":56,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["circos","data-visualization","visualization"],"created_at":"2024-11-28T21:19:04.121Z","updated_at":"2025-10-08T20:12:13.392Z","avatar_url":"https://github.com/node.png","language":null,"readme":"# 项目简介\nCircos教程中文版 翻译自 circos官方的教程 http://circos.ca/documentation/tutorials， 已经过 Circos 作者 Martin 的许可，目前翻译正在进行中。 \n\n使用Gitbook发布，地址为 https://www.gitbook.com/read/book/node/circos 。\n\n加入Circos中文社区: **QQ群** 171307056 \n\n# 章节划分\n\n## 0 INSTALLATION AND CONFIGURATION\n\n1.  UNIX vs Windows\n2.  Installation\n3.  Configuration Files - Syntax, Colors, Fonts and Units\n4.  Colors\n5.  Data Files\n6.  Required Perl Modules\n7.  Runtime Parameters\n8.  Debugging\n9.  Errors\n10.  PNG Output\n11.  SVG Output\n\n## 1 QUICK START\n1.  Hello World\n2.  Ticks \u0026 Labels\n3.  Ideogram Selection, Scale, Color \u0026 Orientation\n4.  Links \u0026 Rules\n5.  Histograms\n6.  Axes \u0026 Backgrounds\n7.  Heat Maps \u0026 Colors\n8.  Text\n9.  Automation \u0026 Macros\n\n## 2 DRAWING IDEOGRAMS\n1.  Ideograms\n2.  Karyotypes\n3.  Filtering\n4.  Ordering\n5.  Cropping\n6.  Spacing and Axis Breaks\n7.  Tags\n8.  Variable Radius\n9.  Labels\n10. Progression and Orientation\n\n## 3 HIGHLIGHTS\n1. Wedge Highlights\n2. Highlight Parameters - Part I - Embedded in Data File\n3. Highlight Parameters - Part II - Using z-depth\n4. Highlight Parameters - Part III - Radial Position\n5. Ideogram Highlights\n6. Recipe 1 - Ideogram Highlights\n7. Recipe 2 - Focusing on a Genome Region\n8. Recipe 3 - Plot Axis Range Highlights\n9. Drawing on Top of Data\n\n## 4 TICK MARKS, GRIDS AND LABELS\n1. Tick Marks - Basics\n2. Tick Marks - Margins\n3. Tick Marks - Label Margins\n4. Tick Marks - Offsets\n5. Grids\n6. Label Formats\n7. Relative Ticks\n8. Ticks at Specific Positions\n9. Tick Rings\n\n## 5 LINKS AND RELATIONSHIPS\n1. Drawing Basic Links\n2. Link Geometry\n3. Link Formatting\n4. Link Rules - Part I\n5. Link Rules - Part II\n6. Link Rules - Part III\n7. Link Rules - Part IV\n8. Link Rules - Part V\n9. Ribbons\n10. Ribbon Twists\n\n## 6 2D DATA TRACKS\n1. Scatter Plots\n2. Line Plots\n3. Histograms\n4. Tiles\n5. Heat Maps\n6. Text—Basic\n7. Text—Stacking\n8. Text—Rules\n9. Glyphs—Part I\n10. Glyphs—Part II\n11. Connectors\n12. Putting It All Together\n\n##7　AXIS SCALING\n1. Global Scale Adjustment\n2. Global Relative Scale Adjustment\n3. Adjusting Scale for Regions\n4. Creating Zoomed Regions\n5. Overlapping Zoomed Regions\n6. Smoothing Scale\n7. Combining Scales\n8. Drawing Data with Scale Adjustment\n\n## 8 RECIPES\n1. Microbial Genome\n2. Link Geometry - Detailed Bezier Control\n3. Labeling Karyotype Bands\n4. Image Maps\n5. Image Transparency and Background\n6. Complex Histograms\n7. Variable Radius Link Ends\n8. Stacked Histograms\n9. Transparent Links\n10. ID Fields\n11. Heat Map Links\n12. Inverted Links\n13. Copy Number Data\n14. Directed Links\n15. Pattern Fills\n16. Automating Tracks\n17. Automating Heatmaps\n18. Circular Stacked Bar Plots\n19. Cortical Maps—Connectograms\n20. Cell Cycle—Part 1\n21. Cell Cycle—Part 2\n22. Nature Cover Encode Diagram\n23. Naming Names\n\n\n## 9 HELPER TOOLS\n1. Generating Random Link Data\n2. Reordering Ideograms to Minimize Overlap\n3. Bundling Links\n4. Filtering Links\n5. Visualizing Tabular Data\n6. Generate Link Density Tracks\n7. Visualizing Categorical Data\n\n## 10 IMAGE MAPS\n1. Image Maps - Introduction and Clickable Ideograms\n2. Image Maps - Clickable Cytogenetic Bands\n3. Clickable Tick Marks\n4. Clickable Highlights and Data\n\n## 11 REFERENCE\n1. Best Practices\n2. API\n3. Command Line Parameters\n4. Configuration Structure and Syntax\n5. \\\u003cimage\u003eblock\n6. \\\u003cideogram\u003eblock\n7. \\\u003clink\u003eblock\n8. \\\u003cplot\u003eblock\n9. \\\u003crule\u003eblock\n10. \\\u003cbackground\u003eblock\n11. \\\u003caxis\u003eblock\n12. \\\u003ccolor\u003eblock\n13. \\\u003cfont\u003eblock\n14. \\\u003cpatterns\u003eblock\n15. \\\u003cguide\u003eblock\n\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnode%2Fcircos-cn","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnode%2Fcircos-cn","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnode%2Fcircos-cn/lists"}