{"id":29625151,"url":"https://github.com/novartis/railroadtracks","last_synced_at":"2025-07-21T06:07:27.394Z","repository":{"id":21907452,"uuid":"25231505","full_name":"Novartis/railroadtracks","owner":"Novartis","description":"Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.","archived":false,"fork":false,"pushed_at":"2015-06-22T14:24:11.000Z","size":887,"stargazers_count":14,"open_issues_count":5,"forks_count":4,"subscribers_count":31,"default_branch":"master","last_synced_at":"2025-07-18T19:00:01.470Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Novartis.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-10-14T23:55:02.000Z","updated_at":"2022-03-07T14:21:06.000Z","dependencies_parsed_at":"2022-08-05T14:15:32.096Z","dependency_job_id":null,"html_url":"https://github.com/Novartis/railroadtracks","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/Novartis/railroadtracks","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Novartis%2Frailroadtracks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Novartis%2Frailroadtracks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Novartis%2Frailroadtracks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Novartis%2Frailroadtracks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Novartis","download_url":"https://codeload.github.com/Novartis/railroadtracks/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Novartis%2Frailroadtracks/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":266248501,"owners_count":23899056,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-07-21T06:07:26.598Z","updated_at":"2025-07-21T06:07:27.382Z","avatar_url":"https://github.com/Novartis.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"\n![logo](https://raw.githubusercontent.com/Novartis/railroadtracks/master/doc/_static/logo_rrt.png)\n\nRailroadtracks\n==============\n\nRailroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.\n\n[![PyPI version](https://badge.fury.io/py/railroadtracks.svg)](http://badge.fury.io/py/railroadtracks)\n\n| Branch        |                                                                                                                                                   |\n|---------------|---------------------------------------------------------------------------------------------------------------------------------------------------|\n| Master        | [![Build Status](https://travis-ci.org/Novartis/railroadtracks.svg?branch=master)](https://travis-ci.org/Novartis/railroadtracks/branches)        |\n| version_0.4.x | [![Build Status](https://travis-ci.org/Novartis/railroadtracks.svg?branch=version_0.4.x)](https://travis-ci.org/Novartis/railroadtracks/branches) |\n| version_0.3.x | [![Build Status](https://travis-ci.org/Novartis/railroadtracks.svg?branch=version_0.3.x)](https://travis-ci.org/Novartis/railroadtracks/branches) |\n\n\n\n\nInstallation\n------------\n\nThe documentation should be consulted for information about the requirements and the installation process.\n\nWhile we are working on a link to a build of the documentation, the Sphinx source for it\nare be consulted: [doc/installation.rst](https://raw.githubusercontent.com/Novartis/railroadtracks/master/doc/installation.rst).\n\nReleased versiond are available on Pypi. Installing the latest release is as easy as:\n```\npip install railroadtracks\n```\n\nThe use the development version, the master branch can be installed with\n```\npip install https://github.com/Novartis/railroadtracks/archive/master.zip\n```\n\nA [Docker](http://www.docker.io) container is also availale (`lgautier/railroadtracks`).\n\n```\n# pull the Docker images from docker.io\ndocker pull lgautier/railroadtracks \n```\n\n```\n# Run an ipython notebook server from the container\ndocker run -it -p 8888:8888 -w /usr/local/packages/railroadtracks/doc/notebooks lgautier/railroadtracks ipython notebook --ip=0.0.0.0 --no-browser\n```\n\nA browser running on the same machine as the container can then be pointed to:\n[http://localhost:8888](http://localhost:8888)\n\nIf on a non-Linux system using [boot2docker](http://boot2docker.io), you may have to point your browser to the IP mapped to the VM docker is running in. The IP can be obtained with:\n\n```\nboot2docker ip\n```\n\nDocumentation\n-------------\n\nSphinx documentation is included in the source tree. An HTML build of the documentation is available at\n[http://pythonhosted.org/railroadtracks/](http://pythonhosted.org/railroadtracks/).\n\nThe tutorial [http://pythonhosted.org/railroadtracks/tutorial.html](http://pythonhosted.org/railroadtracks/tutorial.html)\nis a genuine notebook rendered into the Sphinx document. The notebook and an HTML render of it\nare available, and running ipython notebook through the container (see above) provides a complete environment to go through\nthe tutorial.\n\n\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnovartis%2Frailroadtracks","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fnovartis%2Frailroadtracks","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fnovartis%2Frailroadtracks/lists"}